Annotation Detail for RCL1
Basic Information Top
| Gene Symbol: | RCL1 ( RNAC,RPCL1 ) |
|---|---|
| Gene Full Name: | RNA terminal phosphate cyclase-like 1 |
| Band: | 9p24.1 |
| Quick Links | Entrez ID:10171; OMIM: 611405; Uniprot ID:RCL1_HUMAN; ENSEMBL ID: ENSG00000120158; HGNC ID: 17687 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.194121
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 48 / 564012 | 85 |  |
| neonate | 1 / 31097 | 32 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 4 / 55556 | 71 | |
| adult | 70 / 1939121 | 36 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 8 / 119369 | 67 | |
| germ cell tumor | 13 / 263845 | 49 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 6 / 96359 | 62 | |
| lung tumor | 6 / 103127 | 58 | |
| lymphoma | 9 / 71755 | 125 | |
| non-neoplasia | 6 / 97250 | 61 | |
| normal | 135 / 3360307 | 40 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 5 / 104616 | 47 | |
| primitive neuroectodermal tumor of the CNS | 16 / 125680 | 127 | |
| prostate cancer | 4 / 102680 | 38 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 4 / 40015 | 99 | |
| bladder | 1 / 29757 | 33 | |
| blood | 14 / 123478 | 113 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 6 / 48801 | 122 | |
| brain | 29 / 1100989 | 26 | |
| cervix | 5 / 48171 | 103 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 |  |
| heart | 1 / 89626 | 11 | |
| intestine | 7 / 234472 | 29 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 2 / 24145 | 82 | |
| liver | 17 / 207743 | 81 | |
| lung | 8 / 336974 | 23 | |
| lymph | 4 / 44270 | 90 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 9 / 214812 | 41 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 8 / 280825 | 28 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 6 / 210574 | 28 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 3 / 96619 | 31 | |
| testis | 11 / 330442 | 33 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 4 / 16999 | 235 |  |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 8 / 232878 | 34 | |
| vascular | 2 / 51780 | 38 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 218544_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 30.35 | |
| Adipocyte | 9.9 | |
| AdrenalCortex | 10.5 | |
| Adrenalgland | 8.45 | |
| Amygdala | 7.45 | |
| Appendix | 10.15 | |
| AtrioventricularNode | 12.2 | |
| BDCA4+_DentriticCells | 15.35 | |
| Bonemarrow | 14.35 | |
| BronchialEpithelialCells | 14.4 | |
| CD105+_Endothelial | 177.9 | |
| CD14+_Monocytes | 15 | |
| CD19+_BCells(neg._sel.) | 15.4 | |
| CD33+_Myeloid | 15.35 | |
| CD34+ | 27.5 | |
| CD4+_Tcells | 11.3 | |
| CD56+_NKCells | 14.55 | |
| CD71+_EarlyErythroid | 305.95 | |
| CD8+_Tcells | 13.7 | |
| CardiacMyocytes | 7.85 | |
| Caudatenucleus | 8.95 | |
| Cerebellum | 8.05 | |
| CerebellumPeduncles | 9.55 | |
| CiliaryGanglion | 7.1 | |
| CingulateCortex | 10.2 | |
| Colorectaladenocarcinoma | 10 | |
| DorsalRootGanglion | 10 | |
| FetalThyroid | 11.15 | |
| Fetalbrain | 8.25 | |
| Fetalliver | 19.1 | |
| Fetallung | 8.25 | |
| GlobusPallidus | 7.4 | |
| Heart | 11.15 | |
| Hypothalamus | 10.8 | |
| Kidney | 8.1 | |
| Leukemia_chronicMyelogenousK-562 | 9 | |
| Leukemia_promyelocytic-HL-60 | 10.75 | |
| Leukemialymphoblastic(MOLT-4) | 8 | |
| Liver | 17.2 | |
| Lung | 10.9 | |
| Lymphnode | 10.75 | |
| Lymphoma_burkitts(Daudi) | 22.35 | |
| Lymphoma_burkitts(Raji) | 14.1 | |
| MedullaOblongata | 8.45 | |
| OccipitalLobe | 7.8 | |
| OlfactoryBulb | 7.85 | |
| Ovary | 6.6 | |
| Pancreas | 8.05 | |
| PancreaticIslet | 10.65 | |
| ParietalLobe | 8.75 | |
| Pituitary | 11.6 | |
| Placenta | 10.25 | |
| Pons | 10.5 | |
| PrefrontalCortex | 12.35 | |
| Prostate | 5.7 | |
| Salivarygland | 9.15 | |
| SkeletalMuscle | 11.65 | |
| Skin | 15.25 | |
| SmoothMuscle | 10.05 | |
| Spinalcord | 10.65 | |
| SubthalamicNucleus | 9.15 | |
| SuperiorCervicalGanglion | 11.35 | |
| TemporalLobe | 9.1 | |
| Testis | 8.85 | |
| TestisGermCell | 7.85 | |
| TestisIntersitial | 8.05 | |
| TestisLeydigCell | 9.55 | |
| TestisSeminiferousTubule | 8.5 | |
| Thalamus | 10.15 | |
| Thymus | 7.8 | |
| Thyroid | 9.35 | |
| Tongue | 9.75 | |
| Tonsil | 9.65 | |
| Trachea | 8.35 | |
| TrigeminalGanglion | 10.05 | |
| Uterus | 6.55 | |
| UterusCorpus | 9 | |
| WholeBlood | 7 | |
| Wholebrain | 8.2 | |
| colon | 11.9 | |
| pineal_day | 11.78 | |
| pineal_night | 12.08 | |
| retina | 15.975 | |
| small_intestine | 11.8 | |
- Probe name: CUST_1915_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.2 ± 0.67 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.94 ± 0.35 | |
| Basal Part of Pons | 3.92 ± 0.48 | |
| Cerebellar Cortex | 4.11 ± 0.36 | |
| Cerebellar Nuclei | 3.86 ± 0.48 | |
| Claustrum | 3.89 ± 0.58 | |
| Epithalamus | 4.6 ± 0.44 | |
| Frontal Lobe | 3.86 ± 0.54 | |
| Globus Pallidus | 4.75 ± 0.54 | |
| Hypothalamus | 3.9 ± 0.56 | |
| Insula | 3.89 ± 0.51 | |
| Limbic Lobe | 3.85 ± 0.6 | |
| Mesencephalon | 4.13 ± 0.59 | |
| Myelencephalon | 3.99 ± 0.54 | |
| Occipital Lobe | 4.33 ± 0.58 | |
| Parietal Lobe | 3.95 ± 0.48 | |
| Pontine Tegmentum | 3.99 ± 0.58 | |
| Striatum | 4.2 ± 0.58 | |
| Subthalamus | 4.06 ± 0.19 | |
| Temporal Lobe | 3.8 ± 0.52 | |
| Thalamus | 3.97 ± 0.5 | |
| White Matter | 5.4 ± 0.16 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Rcl1 | CB | Cerebellum | 11.03 | |
| 11.99 | | |||
| Rcl1 | CTX | Cerebral cortex | 20.53 | |
| 14.38 | | |||
| Rcl1 | HIP | Hippocampal region | 28.56 | |
| 35.27 | | |||
| Rcl1 | HPF | Hippocampal formation | 30.05 | |
| 30.33 | | |||
| Rcl1 | HY | Hypothalamus | 13.77 | |
| 10.99 | | |||
| Rcl1 | LSX | Lateral septal complex | 11.33 | |
| 8.51 | | |||
| Rcl1 | MB | Midbrain | 14.52 | |
| 12.63 | | |||
| Rcl1 | MY | Medulla | 21.69 | |
| 24.87 | | |||
| Rcl1 | OLF | Olfactory bulb | 27.98 | |
| 22.01 | | |||
| Rcl1 | P | Pons | 17.52 | |
| 18.05 | | |||
| Rcl1 | PAL | Pallidum | 12.67 | |
| 11.22 | | |||
| Rcl1 | RHP | Retrohippocampal region | 32.52 | |
| 23.96 | | |||
| Rcl1 | sAMY | Striatum-like amygdalar nuclei | 33.14 | |
| 24.33 | | |||
| Rcl1 | STR | Striatum | 14.01 | |
| 10 | | |||
| Rcl1 | STRd | Striatum dorsal region | 12.93 | |
| 9.24 | | |||
| Rcl1 | STRv | Striatum ventral region | 11.74 | |
| 7.81 | | |||
| Rcl1 | TH | Thalamus | 11.36 | |
| 10.39 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00069113 | 15 | 119 | 133 | GVTNDQVDPSVDVLK | Peptide Atlas |