AutismKB 2.0

Annotation Detail for RBM5


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Basic Information Top
Gene Symbol:RBM5 ( FLJ39876,G15,LUCA15,RMB5 )
Gene Full Name: RNA binding motif protein 5
Band: 3p21.31
Quick LinksEntrez ID:10181; OMIM: 606884; Uniprot ID:RBM5_HUMAN; ENSEMBL ID: ENSG00000003756; HGNC ID: 9902
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body14 / 70761197
blastocyst16 / 62319256
fetus198 / 564012351
neonate10 / 31097321
infant2 / 2362084
juvenile4 / 5555671
adult270 / 1939121139
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor11 / 94178116
cervical tumor2 / 3436658
chondrosarcoma11 / 82823132
colorectal tumor20 / 114246175
esophageal tumor12 / 17290694
gastrointestinal tumor15 / 119369125
germ cell tumor58 / 263845219
glioma16 / 106883149
head and neck tumor29 / 136302212
kidney tumor9 / 68959130
leukemia16 / 95842166
liver tumor11 / 96359114
lung tumor6 / 10312758
lymphoma5 / 7175569
non-neoplasia15 / 97250154
normal736 / 3360307219
ovarian tumor1 / 7668213
pancreatic tumor13 / 104616124
primitive neuroectodermal tumor of the CNS5 / 12568039
prostate cancer8 / 10268077
retinoblastoma3 / 4635664
skin tumor14 / 124949112
soft tissue/muscle tissue tumor6 / 12519147
uterine tumor14 / 90257155
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland3 / 3319790
ascites3 / 4001574
bladder3 / 29757100
blood26 / 123478210
bone5 / 7165569
bone marrow8 / 48801163
brain307 / 1100989278
cervix8 / 48171166
connective tissue30 / 149255200
ear1 / 1621261
embryonic tissue48 / 215722222
esophagus13 / 20209643
eye18 / 21105485
heart18 / 89626200
intestine38 / 234472162
kidney36 / 211777169
larynx1 / 2414541
liver23 / 207743110
lung67 / 336974198
lymph2 / 4427045
lymph node16 / 91610174
mammary gland12 / 15327178
mouth24 / 67052357
muscle14 / 107715129
nerve3 / 15768190
ovary3 / 10205129
pancreas33 / 214812153
parathyroid3 / 20539146
pharynx11 / 41328266
pituitary gland4 / 16585241
placenta35 / 280825124
prostate20 / 189345105
salivary gland2 / 2015599
skin20 / 21057494
spleen23 / 53952426
stomach15 / 96619155
testis113 / 330442341
thymus51 / 81131628
thyroid2 / 4747342
tonsil3 / 16999176
trachea7 / 52413133
umbilical cord5 / 13680365
uterus52 / 232878223
vascular9 / 51780173
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201395_at
Cell line Expression level Expression bar
721_B_lymphoblasts233.75
Adipocyte88.25
AdrenalCortex105.4
Adrenalgland76.9
Amygdala127.95
Appendix118.4
AtrioventricularNode56.1
BDCA4+_DentriticCells469.55
Bonemarrow109.25
BronchialEpithelialCells59.55
CD105+_Endothelial394.95
CD14+_Monocytes401.65
CD19+_BCells(neg._sel.)501.85
CD33+_Myeloid579.95
CD34+678.15
CD4+_Tcells607.5
CD56+_NKCells561.15
CD71+_EarlyErythroid155.65
CD8+_Tcells697.8
CardiacMyocytes52.4
Caudatenucleus88.2
Cerebellum54.55
CerebellumPeduncles132.15
CiliaryGanglion34.9
CingulateCortex124.95
Colorectaladenocarcinoma112.45
DorsalRootGanglion54.95
FetalThyroid151.5
Fetalbrain401.9
Fetalliver38
Fetallung221.55
GlobusPallidus59.65
Heart42.5
Hypothalamus359.9
Kidney28.9
Leukemia_chronicMyelogenousK-56282.1
Leukemia_promyelocytic-HL-6098.4
Leukemialymphoblastic(MOLT-4)151.7
Liver15.55
Lung120.55
Lymphnode326.35
Lymphoma_burkitts(Daudi)122.85
Lymphoma_burkitts(Raji)164.35
MedullaOblongata104.25
OccipitalLobe132.6
OlfactoryBulb167.7
Ovary79.95
Pancreas103.8
PancreaticIslet169.2
ParietalLobe98.45
Pituitary207.15
Placenta173.85
Pons76.35
PrefrontalCortex222.55
Prostate180.2
Salivarygland127.85
SkeletalMuscle35.35
Skin65.45
SmoothMuscle61.55
Spinalcord168.1
SubthalamicNucleus76.65
SuperiorCervicalGanglion53.3
TemporalLobe56.5
Testis213.6
TestisGermCell254.15
TestisIntersitial137.15
TestisLeydigCell120.35
TestisSeminiferousTubule124.75
Thalamus115.3
Thymus235.25
Thyroid205.2
Tongue106.2
Tonsil193.6
Trachea66.95
TrigeminalGanglion73.5
Uterus174.25
UterusCorpus141.6
WholeBlood280.3
Wholebrain69.7
colon77.45
pineal_day320.38
pineal_night271.08
retina156.3
small_intestine90.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P328646
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.05 ± 0.49
Basal Forebrain7.49 ± 0.43
Basal Part of Pons7.75 ± 0.46
Cerebellar Cortex7.97 ± 0.35
Cerebellar Nuclei7.36 ± 0.48
Claustrum6.8 ± 0.68
Epithalamus7.99 ± 0.59
Frontal Lobe7.63 ± 0.5
Globus Pallidus7.41 ± 0.19
Hypothalamus7.57 ± 0.46
Insula7.81 ± 0.31
Limbic Lobe7.4 ± 0.44
Mesencephalon7.34 ± 0.52
Myelencephalon7.49 ± 0.46
Occipital Lobe7.15 ± 0.5
Parietal Lobe7.42 ± 0.47
Pontine Tegmentum7.47 ± 0.53
Striatum7.14 ± 0.38
Subthalamus7.62 ± 0.18
Temporal Lobe7.72 ± 0.43
Thalamus7.53 ± 0.39
White Matter8.52 ± 0.43
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rbm5CBCerebellum94.52
100
Rbm5CTXCerebral cortex100
100
Rbm5HIPHippocampal region100
100
Rbm5HPFHippocampal formation100
100
Rbm5HYHypothalamus100
100
Rbm5LSXLateral septal complex100
100
Rbm5MBMidbrain100
100
Rbm5MYMedulla85.93
91.23
Rbm5OLFOlfactory bulb100
100
Rbm5PPons90.23
93.69
Rbm5PALPallidum100
100
Rbm5RHPRetrohippocampal region100
100
Rbm5sAMYStriatum-like amygdalar nuclei100
100
Rbm5STRStriatum100
100
Rbm5STRdStriatum dorsal region100
100
Rbm5STRvStriatum ventral region100
100
Rbm5THThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00009628 13 766 778 CQGITAPIEAQVR Peptide Atlas
RBM5_HUMAN_116 15 116 130 EMMESFEGPQPADVR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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