Annotation Detail for TSHZ1
Basic Information Top
| Gene Symbol: | TSHZ1 ( NY-CO-33,SDCCAG33,TSH1 ) |
|---|---|
| Gene Full Name: | teashirt zinc finger homeobox 1 |
| Band: | 18q22.3 |
| Quick Links | Entrez ID:10194; OMIM: NA; Uniprot ID:TSH1_HUMAN; ENSEMBL ID: ENSG00000179981; HGNC ID: 10669 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.284217
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 6 / 70761 | 84 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 22 / 564012 | 39 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 36 / 1939121 | 18 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 10 / 263845 | 37 | |
| glioma | 11 / 106883 | 102 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 6 / 103127 | 58 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 91 / 3360307 | 27 | |
| ovarian tumor | 5 / 76682 | 65 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 |  |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 3 / 13106 | 228 |  |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 33 / 1100989 | 29 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 6 / 215722 | 27 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 6 / 89626 | 66 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 16 / 336974 | 47 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 7 / 91610 | 76 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 11 / 214812 | 51 | |
| parathyroid | 2 / 20539 | 97 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 3 / 96619 | 31 | |
| testis | 3 / 330442 | 9 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_10171_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.97 ± 1.16 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.46 ± 0.24 | |
| Basal Part of Pons | 2.17 ± 0.55 | |
| Cerebellar Cortex | 2.77 ± 0.83 | |
| Cerebellar Nuclei | 2.85 ± 0.81 | |
| Claustrum | 3.26 ± 0.72 | |
| Epithalamus | 2.23 ± 0.8 | |
| Frontal Lobe | 2.35 ± 0.65 | |
| Globus Pallidus | 2.76 ± 0.43 | |
| Hypothalamus | 2.53 ± 0.73 | |
| Insula | 2.38 ± 0.64 | |
| Limbic Lobe | 2.53 ± 0.78 | |
| Mesencephalon | 2.71 ± 0.77 | |
| Myelencephalon | 2.61 ± 0.67 | |
| Occipital Lobe | 2.92 ± 1.04 | |
| Parietal Lobe | 2.56 ± 0.76 | |
| Pontine Tegmentum | 2.6 ± 0.7 | |
| Striatum | 2.57 ± 0.87 | |
| Subthalamus | 2.62 ± 0.69 | |
| Temporal Lobe | 2.45 ± 0.64 | |
| Thalamus | 2.52 ± 0.7 | |
| White Matter | 2.88 ± 0.41 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Tshz1 | CB | Cerebellum | 72.29 | |
| 78.19 | | |||
| Tshz1 | CTX | Cerebral cortex | 84.2 | |
| 79.18 | | |||
| Tshz1 | HIP | Hippocampal region | 74.27 | |
| 95.93 | | |||
| Tshz1 | HPF | Hippocampal formation | 78.41 | |
| 86.52 | | |||
| Tshz1 | HY | Hypothalamus | 60.75 | |
| 57.01 | | |||
| Tshz1 | LSX | Lateral septal complex | 47.39 | |
| 45.18 | | |||
| Tshz1 | MB | Midbrain | 73.5 | |
| 72.47 | | |||
| Tshz1 | MY | Medulla | 81.37 | |
| 90.62 | | |||
| Tshz1 | OLF | Olfactory bulb | 87.38 | |
| 99.54 | | |||
| Tshz1 | P | Pons | 71.87 | |
| 77.46 | | |||
| Tshz1 | PAL | Pallidum | 60.38 | |
| 65.75 | | |||
| Tshz1 | RHP | Retrohippocampal region | 77.8 | |
| 76.01 | | |||
| Tshz1 | sAMY | Striatum-like amygdalar nuclei | 84.03 | |
| 88.18 | | |||
| Tshz1 | STR | Striatum | 76.69 | |
| 77.04 | | |||
| Tshz1 | STRd | Striatum dorsal region | 72.87 | |
| 70.87 | | |||
| Tshz1 | STRv | Striatum ventral region | 91.33 | |
| 93.23 | | |||
| Tshz1 | TH | Thalamus | 89.6 | |
| 89.13 | |