AutismKB 2.0

Annotation Detail for NUTF2


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Basic Information Top
Gene Symbol:NUTF2 ( NTF2,PP15 )
Gene Full Name: nuclear transport factor 2
Band: 16q22.1
Quick LinksEntrez ID:10204; OMIM: 605813; Uniprot ID:NTF2_HUMAN; ENSEMBL ID: ENSG00000102898; HGNC ID: 13722
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus3 / 5640125
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult10 / 19391215
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor1 / 2638453
glioma1 / 1068839
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma1 / 7175513
non-neoplasia0 / 972500 
normal13 / 33603073
ovarian tumor2 / 7668226
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer3 / 10268029
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain1 / 11009890 
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye2 / 2110549
heart0 / 896260 
intestine0 / 2344720 
kidney1 / 2117774
larynx0 / 241450 
liver0 / 2077430 
lung1 / 3369742
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary2 / 10205119
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta1 / 2808253
prostate4 / 18934521
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202397_at
Cell line Expression level Expression bar
721_B_lymphoblasts250.95
Adipocyte45.9
AdrenalCortex19.8
Adrenalgland18.55
Amygdala30
Appendix16.5
AtrioventricularNode7.65
BDCA4+_DentriticCells46.25
Bonemarrow21.6
BronchialEpithelialCells158.6
CD105+_Endothelial90.1
CD14+_Monocytes32
CD19+_BCells(neg._sel.)34.25
CD33+_Myeloid28
CD34+72.85
CD4+_Tcells25.4
CD56+_NKCells35.25
CD71+_EarlyErythroid48.35
CD8+_Tcells21.95
CardiacMyocytes54.9
Caudatenucleus26.25
Cerebellum19
CerebellumPeduncles21.8
CiliaryGanglion8.85
CingulateCortex23.8
Colorectaladenocarcinoma32.55
DorsalRootGanglion12.4
FetalThyroid21.4
Fetalbrain30.25
Fetalliver36.05
Fetallung45.25
GlobusPallidus10.3
Heart109.85
Hypothalamus34.6
Kidney19.55
Leukemia_chronicMyelogenousK-56254.85
Leukemia_promyelocytic-HL-60148.6
Leukemialymphoblastic(MOLT-4)130.15
Liver49.2
Lung35.85
Lymphnode27
Lymphoma_burkitts(Daudi)73.15
Lymphoma_burkitts(Raji)41.05
MedullaOblongata19.85
OccipitalLobe18.6
OlfactoryBulb23.85
Ovary12.1
Pancreas34.55
PancreaticIslet25.3
ParietalLobe25.8
Pituitary31
Placenta59
Pons22.15
PrefrontalCortex33.75
Prostate42.2
Salivarygland15.3
SkeletalMuscle23.1
Skin9.25
SmoothMuscle75.5
Spinalcord53
SubthalamicNucleus18.45
SuperiorCervicalGanglion14.05
TemporalLobe19.7
Testis60.9
TestisGermCell40.5
TestisIntersitial26.95
TestisLeydigCell21.4
TestisSeminiferousTubule35.1
Thalamus23
Thymus60.1
Thyroid33.7
Tongue15.45
Tonsil27
Trachea16.65
TrigeminalGanglion12.25
Uterus33.25
UterusCorpus18.15
WholeBlood38.15
Wholebrain53.5
colon30.15
pineal_day23.66
pineal_night21.48
retina23.4
small_intestine39.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_6135_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.48 ± 0.23
Basal Forebrain8.22 ± 0.23
Basal Part of Pons8.19 ± 0.23
Cerebellar Cortex7.86 ± 0.21
Cerebellar Nuclei8.35 ± 0.34
Claustrum8.48 ± 0.35
Epithalamus8 ± 0.37
Frontal Lobe8.18 ± 0.31
Globus Pallidus8.5 ± 0.34
Hypothalamus8.23 ± 0.32
Insula8.13 ± 0.29
Limbic Lobe8.37 ± 0.39
Mesencephalon8.23 ± 0.36
Myelencephalon8.18 ± 0.31
Occipital Lobe8.12 ± 0.27
Parietal Lobe8.1 ± 0.36
Pontine Tegmentum8.21 ± 0.36
Striatum8.26 ± 0.3
Subthalamus8.13 ± 0.15
Temporal Lobe8.24 ± 0.3
Thalamus8.06 ± 0.24
White Matter8.39 ± 0.29
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Nutf2CBCerebellum0
0
Nutf2CTXCerebral cortex0
0
Nutf2HIPHippocampal region0
0
Nutf2HPFHippocampal formation0
0
Nutf2HYHypothalamus0
0
Nutf2LSXLateral septal complex0
0
Nutf2MBMidbrain0
0
Nutf2MYMedulla0
0
Nutf2OLFOlfactory bulb0
0
Nutf2PPons0
0
Nutf2PALPallidum0
0
Nutf2RHPRetrohippocampal region0
0
Nutf2sAMYStriatum-like amygdalar nuclei0
0
Nutf2STRStriatum0
0
Nutf2STRdStriatum dorsal region0
0
Nutf2STRvStriatum ventral region0
0
Nutf2THThalamus0
0
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
NTF2_HUMAN_106 14 106 119 NINDAWVCTNDMFR PRIDE
NTF2_HUMAN_55 8 55 62 LSSLPFQK PRIDE
NTF2_HUMAN_63 27 63 89 IQHSITAQDHQPTPDSCIISMVVGQLK PRIDE
NTF2_HUMAN_90 16 90 105 ADEDPIMGFHQMFLLK PRIDE
NTF2_HUMAN_91 16 91 106 ADEDPIMGFHQMFLLK PRIDE
PAp00003998 27 64 90 IQHSITAQDHQPTPDSCIISMVVGQLK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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