AutismKB 2.0

Annotation Detail for USPL1


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Basic Information Top
Gene Symbol:USPL1 ( C13orf22,D13S106E,DKFZp781K2286,FLJ32952,RP11-121O19.1,bA121O19.1 )
Gene Full Name: ubiquitin specific peptidase like 1
Band: 13q12.3
Quick LinksEntrez ID:10208; OMIM: NA; Uniprot ID:USPL1_HUMAN; ENSEMBL ID: ENSG00000132952; HGNC ID: 20294
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst4 / 6231964
fetus23 / 56401240
neonate0 / 310970 
infant1 / 2362042
juvenile0 / 555560 
adult67 / 193912134
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor5 / 11936941
germ cell tumor10 / 26384537
glioma2 / 10688318
head and neck tumor2 / 13630214
kidney tumor2 / 6895929
leukemia6 / 9584262
liver tumor1 / 9635910
lung tumor0 / 1031270 
lymphoma1 / 7175513
non-neoplasia4 / 9725041
normal127 / 336030737
ovarian tumor2 / 7668226
pancreatic tumor5 / 10461647
primitive neuroectodermal tumor of the CNS5 / 12568039
prostate cancer1 / 1026809
retinoblastoma2 / 4635643
skin tumor3 / 12494924
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood4 / 12347832
bone2 / 7165527
bone marrow6 / 48801122
brain41 / 110098937
cervix3 / 4817162
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue10 / 21572246
esophagus0 / 202090 
eye5 / 21105423
heart1 / 8962611
intestine10 / 23447242
kidney8 / 21177737
larynx0 / 241450 
liver3 / 20774314
lung2 / 3369745
lymph0 / 442700 
lymph node13 / 91610141
mammary gland2 / 15327113
mouth2 / 6705229
muscle4 / 10771537
nerve0 / 157680 
ovary3 / 10205129
pancreas8 / 21481237
parathyroid1 / 2053948
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta5 / 28082517
prostate2 / 18934510
salivary gland0 / 201550 
skin8 / 21057437
spleen2 / 5395237
stomach5 / 9661951
testis42 / 330442127
thymus2 / 8113124
thyroid0 / 474730 
tonsil3 / 16999176
trachea6 / 52413114
umbilical cord0 / 136800 
uterus11 / 23287847
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204190_at
Cell line Expression level Expression bar
721_B_lymphoblasts51.8
Adipocyte27.4
AdrenalCortex36.9
Adrenalgland25.95
Amygdala24.6
Appendix35.65
AtrioventricularNode25.3
BDCA4+_DentriticCells127.4
Bonemarrow30.25
BronchialEpithelialCells17.8
CD105+_Endothelial29.1
CD14+_Monocytes34.5
CD19+_BCells(neg._sel.)89.95
CD33+_Myeloid34.85
CD34+38.6
CD4+_Tcells82.75
CD56+_NKCells34.05
CD71+_EarlyErythroid20.75
CD8+_Tcells109.15
CardiacMyocytes47.05
Caudatenucleus34.95
Cerebellum32.9
CerebellumPeduncles21.7
CiliaryGanglion22.2
CingulateCortex24.25
Colorectaladenocarcinoma19.8
DorsalRootGanglion24.35
FetalThyroid35.7
Fetalbrain36.55
Fetalliver47.7
Fetallung25.4
GlobusPallidus24.05
Heart37.95
Hypothalamus37.45
Kidney30.1
Leukemia_chronicMyelogenousK-56233.95
Leukemia_promyelocytic-HL-6039.3
Leukemialymphoblastic(MOLT-4)31.3
Liver42.25
Lung21.4
Lymphnode64.95
Lymphoma_burkitts(Daudi)69.9
Lymphoma_burkitts(Raji)37.3
MedullaOblongata35.6
OccipitalLobe26.7
OlfactoryBulb24.85
Ovary15.25
Pancreas31.15
PancreaticIslet38.6
ParietalLobe39.4
Pituitary43.4
Placenta17.05
Pons26.5
PrefrontalCortex19.8
Prostate20.35
Salivarygland27.25
SkeletalMuscle45.75
Skin19.8
SmoothMuscle22.4
Spinalcord35.1
SubthalamicNucleus28.25
SuperiorCervicalGanglion74.3
TemporalLobe27.15
Testis26.8
TestisGermCell66.15
TestisIntersitial60.95
TestisLeydigCell69.1
TestisSeminiferousTubule44.95
Thalamus28.1
Thymus18.4
Thyroid33.35
Tongue32.5
Tonsil29.25
Trachea24.25
TrigeminalGanglion57.2
Uterus38.05
UterusCorpus25
WholeBlood37.55
Wholebrain19.05
colon21.6
pineal_day39.02
pineal_night38.88
retina29.375
small_intestine23
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P128641
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.41 ± 0.36
Basal Forebrain5.39 ± 0.19
Basal Part of Pons5.41 ± 0.27
Cerebellar Cortex5.66 ± 0.2
Cerebellar Nuclei5.26 ± 0.59
Claustrum5.56 ± 0.35
Epithalamus5.18 ± 0.23
Frontal Lobe5.32 ± 0.34
Globus Pallidus5.1 ± 0.27
Hypothalamus5.37 ± 0.38
Insula5.26 ± 0.3
Limbic Lobe5.36 ± 0.32
Mesencephalon5.3 ± 0.41
Myelencephalon5.32 ± 0.38
Occipital Lobe5.47 ± 0.34
Parietal Lobe5.5 ± 0.29
Pontine Tegmentum5.38 ± 0.32
Striatum5 ± 0.3
Subthalamus5.19 ± 0.2
Temporal Lobe5.4 ± 0.32
Thalamus5.48 ± 0.41
White Matter5.65 ± 0.14
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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