AutismKB 2.0

Annotation Detail for SSX3


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Basic Information Top
Gene Symbol:SSX3 ( CT5.3,MGC119054,MGC14495 )
Gene Full Name: synovial sarcoma, X breakpoint 3
Band: Xp11.23
Quick LinksEntrez ID:10214; OMIM: 300325; Uniprot ID:SSX3_HUMAN; ENSEMBL ID: ENSG00000165584; HGNC ID: 11337
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus0 / 5640120 
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult0 / 19391210 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia2 / 9584220
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal2 / 33603070 
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow2 / 4880140
brain0 / 11009890 
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin1 / 2105744
spleen0 / 539520 
stomach0 / 966190 
testis5 / 33044215
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 216471_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts13.85
Adipocyte6.65
AdrenalCortex6.35
Adrenalgland5.1
Amygdala7.05
Appendix6.2
AtrioventricularNode4.7
BDCA4+_DentriticCells5.4
Bonemarrow6.85
BronchialEpithelialCells6.2
CD105+_Endothelial6.15
CD14+_Monocytes5.5
CD19+_BCells(neg._sel.)6.3
CD33+_Myeloid7.45
CD34+6.95
CD4+_Tcells6.4
CD56+_NKCells7.2
CD71+_EarlyErythroid5.8
CD8+_Tcells5.85
CardiacMyocytes7.9
Caudatenucleus5.35
Cerebellum4.95
CerebellumPeduncles6.85
CiliaryGanglion4.3
CingulateCortex6.25
Colorectaladenocarcinoma6.05
DorsalRootGanglion4.8
FetalThyroid5.9
Fetalbrain6.2
Fetalliver5.35
Fetallung5.2
GlobusPallidus4.45
Heart8.7
Hypothalamus6.55
Kidney5.1
Leukemia_chronicMyelogenousK-5625.55
Leukemia_promyelocytic-HL-607.05
Leukemialymphoblastic(MOLT-4)4.8
Liver7.9
Lung6.65
Lymphnode5.2
Lymphoma_burkitts(Daudi)21.4
Lymphoma_burkitts(Raji)8.75
MedullaOblongata5.6
OccipitalLobe5.3
OlfactoryBulb4.8
Ovary4.05
Pancreas4.9
PancreaticIslet7.8
ParietalLobe6.5
Pituitary7.2
Placenta7.5
Pons5.75
PrefrontalCortex7.1
Prostate7.2
Salivarygland4.75
SkeletalMuscle21.85
Skin4.6
SmoothMuscle7
Spinalcord6.95
SubthalamicNucleus5.5
SuperiorCervicalGanglion6.8
TemporalLobe5.5
Testis42.5
TestisGermCell139.8
TestisIntersitial157.65
TestisLeydigCell129.95
TestisSeminiferousTubule112.45
Thalamus5.95
Thymus4.75
Thyroid9.6
Tongue6
Tonsil5.95
Trachea5.75
TrigeminalGanglion5.95
Uterus5
UterusCorpus5.75
WholeBlood6.7
Wholebrain5.15
colon6.2
pineal_day7.78
pineal_night7.46
retina7.475
small_intestine5.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_890_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.56 ± 1.09
Basal Forebrain2.03 ± 0.27
Basal Part of Pons1.89 ± 0.64
Cerebellar Cortex1.84 ± 0.63
Cerebellar Nuclei2.38 ± 0.84
Claustrum3.33 ± 0.98
Epithalamus1.71 ± 0.79
Frontal Lobe1.88 ± 0.74
Globus Pallidus2.78 ± 0.5
Hypothalamus2.13 ± 0.72
Insula1.86 ± 0.54
Limbic Lobe2 ± 0.66
Mesencephalon2.21 ± 0.71
Myelencephalon2.07 ± 0.72
Occipital Lobe2.01 ± 0.58
Parietal Lobe2.13 ± 0.84
Pontine Tegmentum2.17 ± 0.94
Striatum2.25 ± 0.7
Subthalamus2.12 ± 0.67
Temporal Lobe2.02 ± 0.78
Thalamus1.98 ± 0.62
White Matter2.68 ± 0.14
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018