AutismKB 2.0

Annotation Detail for PRG4


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Basic Information Top
Gene Symbol:PRG4 ( CACP,FLJ32635,HAPO,JCAP,MSF,SZP,bG174L6.2 )
Gene Full Name: proteoglycan 4
Band: 1q31.1
Quick LinksEntrez ID:10216; OMIM: 604283; Uniprot ID:PRG4_HUMAN; ENSEMBL ID: ENSG00000116690; HGNC ID: 9364
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus11 / 56401219
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult38 / 193912119
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor2 / 3436658
chondrosarcoma2 / 8282324
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor0 / 2638450 
glioma1 / 1068839
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia154 / 972501583
normal39 / 336030711
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer7 / 10268068
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain6 / 11009895
cervix5 / 48171103
connective tissue167 / 1492551118
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye2 / 2110549
heart2 / 8962622
intestine1 / 2344724
kidney0 / 2117770 
larynx0 / 241450 
liver9 / 20774343
lung1 / 3369742
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate7 / 18934536
salivary gland0 / 201550 
skin0 / 2105740 
spleen1 / 5395218
stomach1 / 9661910
testis1 / 3304423
thymus3 / 8113136
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 206007_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.25
Adipocyte30.55
AdrenalCortex9.75
Adrenalgland6.7
Amygdala6.95
Appendix9.75
AtrioventricularNode8
BDCA4+_DentriticCells6.7
Bonemarrow8.2
BronchialEpithelialCells6.75
CD105+_Endothelial7.1
CD14+_Monocytes7.7
CD19+_BCells(neg._sel.)7.3
CD33+_Myeloid8.6
CD34+8.55
CD4+_Tcells6.95
CD56+_NKCells7.75
CD71+_EarlyErythroid6.8
CD8+_Tcells6.45
CardiacMyocytes13.05
Caudatenucleus6.45
Cerebellum6
CerebellumPeduncles9.25
CiliaryGanglion31.3
CingulateCortex7.8
Colorectaladenocarcinoma7.15
DorsalRootGanglion7.9
FetalThyroid7.75
Fetalbrain6.75
Fetalliver6.6
Fetallung5.2
GlobusPallidus6.1
Heart13.9
Hypothalamus7.4
Kidney7.1
Leukemia_chronicMyelogenousK-5626.35
Leukemia_promyelocytic-HL-606.35
Leukemialymphoblastic(MOLT-4)5.3
Liver12.2
Lung7.8
Lymphnode5.9
Lymphoma_burkitts(Daudi)9.8
Lymphoma_burkitts(Raji)11.45
MedullaOblongata6.55
OccipitalLobe6.35
OlfactoryBulb5.55
Ovary5.65
Pancreas6.35
PancreaticIslet9.75
ParietalLobe8.45
Pituitary8.45
Placenta6.7
Pons7.4
PrefrontalCortex8.4
Prostate8
Salivarygland6.25
SkeletalMuscle12.8
Skin7.65
SmoothMuscle8.15
Spinalcord7.75
SubthalamicNucleus7.25
SuperiorCervicalGanglion51.45
TemporalLobe7.05
Testis6.15
TestisGermCell5.55
TestisIntersitial6.45
TestisLeydigCell7.8
TestisSeminiferousTubule6.25
Thalamus7.6
Thymus5.15
Thyroid8.1
Tongue8.6
Tonsil7.25
Trachea5.95
TrigeminalGanglion10.85
Uterus5.65
UterusCorpus8.05
WholeBlood7.5
Wholebrain5.85
colon7.05
pineal_day8.42
pineal_night8.28
retina8.6
small_intestine6.65
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Prg4CBCerebellum5.9
8.39
Prg4CTXCerebral cortex6.37
3.82
Prg4HIPHippocampal region4.05
3.97
Prg4HPFHippocampal formation6.46
4.74
Prg4HYHypothalamus0.79
0.55
Prg4LSXLateral septal complex0.04
0
Prg4MBMidbrain1.54
4.06
Prg4MYMedulla2.69
3.09
Prg4OLFOlfactory bulb11.89
7.69
Prg4PPons1.67
1.54
Prg4PALPallidum0.74
0.45
Prg4RHPRetrohippocampal region9.79
5.57
Prg4sAMYStriatum-like amygdalar nuclei8.71
3.78
Prg4STRStriatum1.71
0.83
Prg4STRdStriatum dorsal region1.66
0.87
Prg4STRvStriatum ventral region0.46
0.21
Prg4THThalamus0.27
0.54
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00025361 17 1235 1251 GFGGLTGQIVAALSTAK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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