AutismKB 2.0

Annotation Detail for RCAN2


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Basic Information Top
Gene Symbol:RCAN2 ( CSP2,DSCR1L1,MCIP2,RCN2,ZAKI-4,ZAKI4,hRCN2 )
Gene Full Name: regulator of calcineurin 2
Band: 6p12.3
Quick LinksEntrez ID:10231; OMIM: 604876; Uniprot ID:RCAN2_HUMAN; ENSEMBL ID: ENSG00000172348; HGNC ID: 3041
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus37 / 56401265
neonate2 / 3109764
infant1 / 2362042
juvenile2 / 5555635
adult98 / 193912150
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor25 / 26384594
glioma5 / 10688346
head and neck tumor1 / 1363027
kidney tumor10 / 68959145
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia13 / 97250133
normal278 / 336030782
ovarian tumor0 / 766820 
pancreatic tumor9 / 10461686
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone2 / 7165527
bone marrow0 / 488010 
brain243 / 1100989220
cervix0 / 481710 
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye12 / 21105456
heart10 / 89626111
intestine2 / 2344728
kidney21 / 21177799
larynx0 / 241450 
liver1 / 2077434
lung7 / 33697420
lymph0 / 442700 
lymph node0 / 916100 
mammary gland7 / 15327145
mouth0 / 670520 
muscle2 / 10771518
nerve2 / 15768126
ovary0 / 1020510 
pancreas12 / 21481255
parathyroid3 / 20539146
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta2 / 2808257
prostate2 / 18934510
salivary gland0 / 201550 
skin5 / 21057423
spleen0 / 539520 
stomach2 / 9661920
testis25 / 33044275
thymus2 / 8113124
thyroid1 / 4747321
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus5 / 23287821
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203498_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.5
Adipocyte8.7
AdrenalCortex10.4
Adrenalgland6.9
Amygdala508.85
Appendix39.2
AtrioventricularNode8.25
BDCA4+_DentriticCells6.9
Bonemarrow8.25
BronchialEpithelialCells7.9
CD105+_Endothelial8.15
CD14+_Monocytes8.05
CD19+_BCells(neg._sel.)7.65
CD33+_Myeloid8.7
CD34+9.45
CD4+_Tcells7.15
CD56+_NKCells8.05
CD71+_EarlyErythroid7.2
CD8+_Tcells6.6
CardiacMyocytes10.25
Caudatenucleus253.1
Cerebellum122.3
CerebellumPeduncles96.4
CiliaryGanglion28.25
CingulateCortex609.8
Colorectaladenocarcinoma7.4
DorsalRootGanglion32.65
FetalThyroid8.15
Fetalbrain18.3
Fetalliver6.95
Fetallung6.45
GlobusPallidus286.2
Heart80.25
Hypothalamus781.8
Kidney9.6
Leukemia_chronicMyelogenousK-5626.75
Leukemia_promyelocytic-HL-606.85
Leukemialymphoblastic(MOLT-4)6.05
Liver11.05
Lung9
Lymphnode6.65
Lymphoma_burkitts(Daudi)9.8
Lymphoma_burkitts(Raji)10.85
MedullaOblongata693.35
OccipitalLobe558.9
OlfactoryBulb13.7
Ovary6
Pancreas7.2
PancreaticIslet92.25
ParietalLobe368.65
Pituitary86.25
Placenta8
Pons239.9
PrefrontalCortex667
Prostate10.15
Salivarygland6.55
SkeletalMuscle13.25
Skin15.8
SmoothMuscle8.4
Spinalcord115.05
SubthalamicNucleus388.9
SuperiorCervicalGanglion21.15
TemporalLobe248.65
Testis6.65
TestisGermCell20.85
TestisIntersitial7.25
TestisLeydigCell11.35
TestisSeminiferousTubule6.85
Thalamus617.85
Thymus6.05
Thyroid26.45
Tongue28.6
Tonsil7.85
Trachea9.6
TrigeminalGanglion11.65
Uterus19.85
UterusCorpus7.75
WholeBlood7.9
Wholebrain743.7
colon13.4
pineal_day165.22
pineal_night180.26
retina582.2
small_intestine13.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_10932_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.04 ± 0.48
Basal Forebrain9.86 ± 0.49
Basal Part of Pons10.04 ± 0.4
Cerebellar Cortex9.08 ± 0.5
Cerebellar Nuclei10.55 ± 0.55
Claustrum10.34 ± 0.52
Epithalamus8.45 ± 1.23
Frontal Lobe9.82 ± 0.83
Globus Pallidus10.45 ± 0.63
Hypothalamus10.03 ± 0.42
Insula9.39 ± 0.4
Limbic Lobe9.52 ± 0.94
Mesencephalon10.36 ± 0.71
Myelencephalon9.69 ± 0.73
Occipital Lobe10.04 ± 0.6
Parietal Lobe10.04 ± 0.64
Pontine Tegmentum9.54 ± 0.49
Striatum8.81 ± 0.7
Subthalamus10.87 ± 0.08
Temporal Lobe9.32 ± 0.57
Thalamus9.98 ± 0.48
White Matter9.2 ± 0.93
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Dscr1l1CBCerebellum58.75
82.65
Dscr1l1CTXCerebral cortex99.02
100
Dscr1l1HIPHippocampal region29.44
46.94
Dscr1l1HPFHippocampal formation51.45
72.79
Dscr1l1HYHypothalamus100
100
Dscr1l1LSXLateral septal complex84.12
77.56
Dscr1l1MBMidbrain100
100
Dscr1l1MYMedulla100
100
Dscr1l1OLFOlfactory bulb65.13
81.72
Dscr1l1PPons95.1
100
Dscr1l1PALPallidum92.42
100
Dscr1l1RHPRetrohippocampal region77.02
95.42
Dscr1l1sAMYStriatum-like amygdalar nuclei92.58
100
Dscr1l1STRStriatum93.77
95.44
Dscr1l1STRdStriatum dorsal region97.64
98.99
Dscr1l1STRvStriatum ventral region93.3
89.28
Dscr1l1THThalamus100
100
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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