Annotation Detail for DCAF7
Basic Information Top
| Gene Symbol: | DCAF7 ( AN11,HAN11,SWAN-1,WDR68 ) |
|---|---|
| Gene Full Name: | DDB1 and CUL4 associated factor 7 |
| Band: | 17q23.3 |
| Quick Links | Entrez ID:10238; OMIM: 605973; Uniprot ID:DCAF7_HUMAN; ENSEMBL ID: ENSG00000136485; HGNC ID: 30915 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.410596
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 15 / 70761 | 211 |  |
| blastocyst | 9 / 62319 | 144 |  |
| fetus | 87 / 564012 | 154 | |
| neonate | 0 / 31097 | 0 | |
| infant | 4 / 23620 | 169 | |
| juvenile | 10 / 55556 | 179 | |
| adult | 217 / 1939121 | 111 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 3 / 12794 | 234 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 20 / 94178 | 212 | |
| cervical tumor | 6 / 34366 | 174 | |
| chondrosarcoma | 9 / 82823 | 108 | |
| colorectal tumor | 20 / 114246 | 175 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 8 / 119369 | 67 | |
| germ cell tumor | 26 / 263845 | 98 | |
| glioma | 14 / 106883 | 130 | |
| head and neck tumor | 13 / 136302 | 95 | |
| kidney tumor | 9 / 68959 | 130 | |
| leukemia | 12 / 95842 | 125 | |
| liver tumor | 12 / 96359 | 124 | |
| lung tumor | 16 / 103127 | 155 | |
| lymphoma | 6 / 71755 | 83 | |
| non-neoplasia | 7 / 97250 | 71 | |
| normal | 374 / 3360307 | 111 | |
| ovarian tumor | 8 / 76682 | 104 | |
| pancreatic tumor | 9 / 104616 | 86 | |
| primitive neuroectodermal tumor of the CNS | 19 / 125680 | 151 | |
| prostate cancer | 19 / 102680 | 185 | |
| retinoblastoma | 18 / 46356 | 388 | |
| skin tumor | 17 / 124949 | 136 | |
| soft tissue/muscle tissue tumor | 18 / 125191 | 143 | |
| uterine tumor | 10 / 90257 | 110 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 3 / 13106 | 228 | |
| adrenal gland | 4 / 33197 | 120 | |
| ascites | 1 / 40015 | 24 |  |
| bladder | 3 / 29757 | 100 | |
| blood | 15 / 123478 | 121 | |
| bone | 8 / 71655 | 111 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 91 / 1100989 | 82 | |
| cervix | 6 / 48171 | 124 | |
| connective tissue | 9 / 149255 | 60 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 44 / 215722 | 203 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 46 / 211054 | 217 | |
| heart | 7 / 89626 | 78 | |
| intestine | 38 / 234472 | 162 | |
| kidney | 18 / 211777 | 84 | |
| larynx | 3 / 24145 | 124 | |
| liver | 17 / 207743 | 81 | |
| lung | 54 / 336974 | 160 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 27 / 91610 | 294 | |
| mammary gland | 24 / 153271 | 156 | |
| mouth | 10 / 67052 | 149 | |
| muscle | 10 / 107715 | 92 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 12 / 102051 | 117 | |
| pancreas | 32 / 214812 | 148 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 4 / 41328 | 96 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 33 / 280825 | 117 | |
| prostate | 25 / 189345 | 132 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 22 / 210574 | 104 | |
| spleen | 4 / 53952 | 74 | |
| stomach | 10 / 96619 | 103 | |
| testis | 22 / 330442 | 66 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 3 / 16999 | 176 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 2 / 13680 | 146 | |
| uterus | 22 / 232878 | 94 | |
| vascular | 2 / 51780 | 38 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 221744_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 138.35 | |
| Adipocyte | 40.9 | |
| AdrenalCortex | 57.15 | |
| Adrenalgland | 40.9 | |
| Amygdala | 48.9 | |
| Appendix | 44.75 | |
| AtrioventricularNode | 44.65 | |
| BDCA4+_DentriticCells | 66.9 | |
| Bonemarrow | 81.5 | |
| BronchialEpithelialCells | 49.3 | |
| CD105+_Endothelial | 125.6 | |
| CD14+_Monocytes | 172.7 | |
| CD19+_BCells(neg._sel.) | 81.4 | |
| CD33+_Myeloid | 158.75 | |
| CD34+ | 110.85 | |
| CD4+_Tcells | 75.65 | |
| CD56+_NKCells | 125.2 | |
| CD71+_EarlyErythroid | 47 | |
| CD8+_Tcells | 97.65 | |
| CardiacMyocytes | 101.75 | |
| Caudatenucleus | 39.45 | |
| Cerebellum | 55.7 | |
| CerebellumPeduncles | 81.7 | |
| CiliaryGanglion | 47.25 | |
| CingulateCortex | 55.35 | |
| Colorectaladenocarcinoma | 139.6 | |
| DorsalRootGanglion | 38.5 | |
| FetalThyroid | 55.5 | |
| Fetalbrain | 57.95 | |
| Fetalliver | 38.5 | |
| Fetallung | 36.6 | |
| GlobusPallidus | 42.1 | |
| Heart | 85.15 | |
| Hypothalamus | 45.9 | |
| Kidney | 49.65 | |
| Leukemia_chronicMyelogenousK-562 | 77.05 | |
| Leukemia_promyelocytic-HL-60 | 46.95 | |
| Leukemialymphoblastic(MOLT-4) | 96.65 | |
| Liver | 92.1 | |
| Lung | 57.35 | |
| Lymphnode | 35.7 | |
| Lymphoma_burkitts(Daudi) | 89.9 | |
| Lymphoma_burkitts(Raji) | 78.9 | |
| MedullaOblongata | 38.55 | |
| OccipitalLobe | 45.55 | |
| OlfactoryBulb | 39.2 | |
| Ovary | 35.6 | |
| Pancreas | 52.05 | |
| PancreaticIslet | 44.85 | |
| ParietalLobe | 60.2 | |
| Pituitary | 57.6 | |
| Placenta | 48.8 | |
| Pons | 49.15 | |
| PrefrontalCortex | 45.85 | |
| Prostate | 78.55 | |
| Salivarygland | 52.65 | |
| SkeletalMuscle | 78.15 | |
| Skin | 47.05 | |
| SmoothMuscle | 55.65 | |
| Spinalcord | 38 | |
| SubthalamicNucleus | 46.65 | |
| SuperiorCervicalGanglion | 77.6 | |
| TemporalLobe | 42.5 | |
| Testis | 35 | |
| TestisGermCell | 44.45 | |
| TestisIntersitial | 38.85 | |
| TestisLeydigCell | 48.55 | |
| TestisSeminiferousTubule | 47.5 | |
| Thalamus | 55.7 | |
| Thymus | 60.95 | |
| Thyroid | 46.35 | |
| Tongue | 55.9 | |
| Tonsil | 69.8 | |
| Trachea | 42.1 | |
| TrigeminalGanglion | 61.6 | |
| Uterus | 33.55 | |
| UterusCorpus | 35.75 | |
| WholeBlood | 61.25 | |
| Wholebrain | 36.5 | |
| colon | 42.05 | |
| pineal_day | 106.4 | |
| pineal_night | 103.68 | |
| retina | 80.775 | |
| small_intestine | 40.9 | |
- Probe name: A_23_P422268
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.27 ± 0.43 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.36 ± 0.2 | |
| Basal Part of Pons | 5.21 ± 0.31 | |
| Cerebellar Cortex | 5.45 ± 0.33 | |
| Cerebellar Nuclei | 5.04 ± 0.56 | |
| Claustrum | 5.13 ± 0.65 | |
| Epithalamus | 5.28 ± 0.39 | |
| Frontal Lobe | 5.33 ± 0.36 | |
| Globus Pallidus | 5.47 ± 0.27 | |
| Hypothalamus | 5.28 ± 0.3 | |
| Insula | 5.33 ± 0.29 | |
| Limbic Lobe | 5.32 ± 0.35 | |
| Mesencephalon | 5.24 ± 0.37 | |
| Myelencephalon | 5.35 ± 0.33 | |
| Occipital Lobe | 5.11 ± 0.32 | |
| Parietal Lobe | 5.2 ± 0.35 | |
| Pontine Tegmentum | 5.3 ± 0.51 | |
| Striatum | 5.31 ± 0.3 | |
| Subthalamus | 5.12 ± 0.26 | |
| Temporal Lobe | 5.38 ± 0.3 | |
| Thalamus | 5.27 ± 0.42 | |
| White Matter | 5.62 ± 0.34 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Wdr68 | CB | Cerebellum | 18.9 | |
| 26.49 | | |||
| Wdr68 | CTX | Cerebral cortex | 65.6 | |
| 66.89 | | |||
| Wdr68 | HIP | Hippocampal region | 80.06 | |
| 100 | | |||
| Wdr68 | HPF | Hippocampal formation | 84.27 | |
| 100 | | |||
| Wdr68 | HY | Hypothalamus | 54.37 | |
| 55.06 | | |||
| Wdr68 | LSX | Lateral septal complex | 7.2 | |
| 6.92 | | |||
| Wdr68 | MB | Midbrain | 23.2 | |
| 24.81 | | |||
| Wdr68 | MY | Medulla | 15.28 | |
| 19.74 | | |||
| Wdr68 | OLF | Olfactory bulb | 78.51 | |
| 89.46 | | |||
| Wdr68 | P | Pons | 25.93 | |
| 31.95 | | |||
| Wdr68 | PAL | Pallidum | 38.95 | |
| 45 | | |||
| Wdr68 | RHP | Retrohippocampal region | 95.92 | |
| 100 | | |||
| Wdr68 | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 100 | | |||
| Wdr68 | STR | Striatum | 44 | |
| 39.75 | | |||
| Wdr68 | STRd | Striatum dorsal region | 35.13 | |
| 29.52 | | |||
| Wdr68 | STRv | Striatum ventral region | 54.37 | |
| 48.67 | | |||
| Wdr68 | TH | Thalamus | 23.43 | |
| 24.29 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00069537 | 19 | 208 | 226 | HLEHSTIIYEDPQHHPLLR | Peptide Atlas |