AutismKB 2.0

Annotation Detail for STAG1


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Basic Information Top
Gene Symbol:STAG1 ( DKFZp781D1416,SA1 )
Gene Full Name: stromal antigen 1
Band: 3q22.3
Quick LinksEntrez ID:10274; OMIM: 604358; Uniprot ID:STAG1_HUMAN; ENSEMBL ID: ENSG00000118007; HGNC ID: 11354
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst5 / 6231980
fetus55 / 56401297
neonate1 / 3109732
infant0 / 236200 
juvenile4 / 5555671
adult112 / 193912157
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor4 / 34366116
chondrosarcoma8 / 8282396
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor4 / 11936933
germ cell tumor22 / 26384583
glioma4 / 10688337
head and neck tumor6 / 13630244
kidney tumor1 / 6895914
leukemia4 / 9584241
liver tumor2 / 9635920
lung tumor0 / 1031270 
lymphoma4 / 7175555
non-neoplasia6 / 9725061
normal193 / 336030757
ovarian tumor2 / 7668226
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer4 / 10268038
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor8 / 9025788
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland3 / 3319790
ascites3 / 4001574
bladder1 / 2975733
blood4 / 12347832
bone7 / 7165597
bone marrow0 / 488010 
brain29 / 110098926
cervix4 / 4817183
connective tissue9 / 14925560
ear1 / 1621261
embryonic tissue14 / 21572264
esophagus0 / 202090 
eye7 / 21105433
heart7 / 8962678
intestine12 / 23447251
kidney11 / 21177751
larynx1 / 2414541
liver6 / 20774328
lung8 / 33697423
lymph1 / 4427022
lymph node8 / 9161087
mammary gland9 / 15327158
mouth3 / 6705244
muscle14 / 107715129
nerve1 / 1576863
ovary6 / 10205158
pancreas6 / 21481227
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta16 / 28082556
prostate8 / 18934542
salivary gland0 / 201550 
skin6 / 21057428
spleen0 / 539520 
stomach0 / 966190 
testis30 / 33044290
thymus9 / 81131110
thyroid5 / 47473105
tonsil0 / 169990 
trachea4 / 5241376
umbilical cord1 / 1368073
uterus16 / 23287868
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202293_at
Cell line Expression level Expression bar
721_B_lymphoblasts37.9
Adipocyte6.15
AdrenalCortex6.3
Adrenalgland4.85
Amygdala5.8
Appendix6.1
AtrioventricularNode4.75
BDCA4+_DentriticCells18.7
Bonemarrow5.8
BronchialEpithelialCells5.6
CD105+_Endothelial6.5
CD14+_Monocytes7.25
CD19+_BCells(neg._sel.)9.45
CD33+_Myeloid7.4
CD34+14.05
CD4+_Tcells7.2
CD56+_NKCells8.55
CD71+_EarlyErythroid18.25
CD8+_Tcells7.9
CardiacMyocytes12.4
Caudatenucleus5.15
Cerebellum4.55
CerebellumPeduncles6.65
CiliaryGanglion4.3
CingulateCortex5.75
Colorectaladenocarcinoma31.15
DorsalRootGanglion4.65
FetalThyroid5.65
Fetalbrain5.65
Fetalliver5.85
Fetallung7.6
GlobusPallidus4.3
Heart7.9
Hypothalamus5.85
Kidney4.75
Leukemia_chronicMyelogenousK-5625.05
Leukemia_promyelocytic-HL-605
Leukemialymphoblastic(MOLT-4)11
Liver8.05
Lung6
Lymphnode5.75
Lymphoma_burkitts(Daudi)7.6
Lymphoma_burkitts(Raji)8.2
MedullaOblongata5.2
OccipitalLobe4.95
OlfactoryBulb4.45
Ovary4.05
Pancreas4.6
PancreaticIslet6.1
ParietalLobe6.1
Pituitary6.5
Placenta5.65
Pons5.45
PrefrontalCortex6.9
Prostate6.85
Salivarygland5
SkeletalMuscle7
Skin4.55
SmoothMuscle7.25
Spinalcord5.85
SubthalamicNucleus5.15
SuperiorCervicalGanglion7.05
TemporalLobe5.25
Testis4.75
TestisGermCell6.7
TestisIntersitial4.8
TestisLeydigCell5.65
TestisSeminiferousTubule5.05
Thalamus5.75
Thymus4.35
Thyroid13.65
Tongue6.1
Tonsil5.65
Trachea5.85
TrigeminalGanglion6
Uterus22.4
UterusCorpus5.65
WholeBlood9.8
Wholebrain4.5
colon8.5
pineal_day7.02
pineal_night6.92
retina6.75
small_intestine5.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_6127_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.34 ± 0.67
Basal Forebrain4.6 ± 0.32
Basal Part of Pons4.09 ± 0.48
Cerebellar Cortex4.72 ± 0.29
Cerebellar Nuclei4.02 ± 0.73
Claustrum4.27 ± 0.64
Epithalamus4.78 ± 0.51
Frontal Lobe3.93 ± 0.66
Globus Pallidus4.38 ± 0.66
Hypothalamus4.48 ± 0.54
Insula3.88 ± 0.47
Limbic Lobe4.07 ± 0.54
Mesencephalon4.13 ± 0.6
Myelencephalon4.05 ± 0.55
Occipital Lobe4.63 ± 0.47
Parietal Lobe4.1 ± 0.55
Pontine Tegmentum4.26 ± 0.73
Striatum4.06 ± 0.62
Subthalamus4.47 ± 0.57
Temporal Lobe4.03 ± 0.59
Thalamus4.01 ± 0.57
White Matter5.2 ± 0.51
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Stag1CBCerebellum3.04
2.86
Stag1CTXCerebral cortex0.92
0.74
Stag1HIPHippocampal region5.31
4.83
Stag1HPFHippocampal formation3.47
2.94
Stag1HYHypothalamus0.02
0.05
Stag1LSXLateral septal complex0.18
0.1
Stag1MBMidbrain0.54
0.58
Stag1MYMedulla0.59
0.5
Stag1OLFOlfactory bulb1.89
1.27
Stag1PPons0.7
0.74
Stag1PALPallidum0.14
0.26
Stag1RHPRetrohippocampal region0.66
0.51
Stag1sAMYStriatum-like amygdalar nuclei0.29
0.27
Stag1STRStriatum0.28
0.19
Stag1STRdStriatum dorsal region0.16
0.12
Stag1STRvStriatum ventral region0.71
0.4
Stag1THThalamus0.47
0.52
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00075067 13 321 333 MYSDAFLNDSYLK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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