AutismKB 2.0

Annotation Detail for SNAPC5


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Basic Information Top
Gene Symbol:SNAPC5 ( SNAP19 )
Gene Full Name: small nuclear RNA activating complex, polypeptide 5, 19kDa
Band: 15q22.31
Quick LinksEntrez ID:10302; OMIM: 605979; Uniprot ID:SNPC5_HUMAN; ENSEMBL ID: ENSG00000174446; HGNC ID: 15484
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst2 / 6231932
fetus23 / 56401240
neonate3 / 3109796
infant1 / 2362042
juvenile0 / 555560 
adult75 / 193912138
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor0 / 941780 
cervical tumor1 / 3436629
chondrosarcoma4 / 8282348
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor4 / 26384515
glioma3 / 10688328
head and neck tumor8 / 13630258
kidney tumor2 / 6895929
leukemia3 / 9584231
liver tumor2 / 9635920
lung tumor2 / 10312719
lymphoma5 / 7175569
non-neoplasia4 / 9725041
normal137 / 336030740
ovarian tumor2 / 7668226
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer3 / 10268029
retinoblastoma2 / 4635643
skin tumor3 / 12494924
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites2 / 4001549
bladder2 / 2975767
blood8 / 12347864
bone3 / 7165541
bone marrow4 / 4880181
brain41 / 110098937
cervix3 / 4817162
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue7 / 21572232
esophagus0 / 202090 
eye7 / 21105433
heart2 / 8962622
intestine7 / 23447229
kidney3 / 21177714
larynx1 / 2414541
liver4 / 20774319
lung15 / 33697444
lymph5 / 44270112
lymph node3 / 9161032
mammary gland0 / 1532710 
mouth4 / 6705259
muscle1 / 1077159
nerve0 / 157680 
ovary2 / 10205119
pancreas4 / 21481218
parathyroid6 / 20539292
pharynx4 / 4132896
pituitary gland0 / 165850 
placenta7 / 28082524
prostate5 / 18934526
salivary gland0 / 201550 
skin8 / 21057437
spleen3 / 5395255
stomach0 / 966190 
testis13 / 33044239
thymus3 / 8113136
thyroid5 / 47473105
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord3 / 13680219
uterus5 / 23287821
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 213203_at
Cell line Expression level Expression bar
721_B_lymphoblasts81.4
Adipocyte32.85
AdrenalCortex22.4
Adrenalgland22.95
Amygdala117.2
Appendix54.5
AtrioventricularNode13.95
BDCA4+_DentriticCells58.4
Bonemarrow9.45
BronchialEpithelialCells48.15
CD105+_Endothelial45.7
CD14+_Monocytes62.3
CD19+_BCells(neg._sel.)85.15
CD33+_Myeloid78.3
CD34+61.45
CD4+_Tcells70.55
CD56+_NKCells61.85
CD71+_EarlyErythroid10.65
CD8+_Tcells56.25
CardiacMyocytes9
Caudatenucleus77.35
Cerebellum39
CerebellumPeduncles49.4
CiliaryGanglion6.8
CingulateCortex57.25
Colorectaladenocarcinoma23.2
DorsalRootGanglion27
FetalThyroid15.6
Fetalbrain30.45
Fetalliver12.5
Fetallung12.85
GlobusPallidus23.6
Heart8.6
Hypothalamus150.55
Kidney14.2
Leukemia_chronicMyelogenousK-56293.15
Leukemia_promyelocytic-HL-6071.3
Leukemialymphoblastic(MOLT-4)51.7
Liver12.65
Lung13.75
Lymphnode32.15
Lymphoma_burkitts(Daudi)60.5
Lymphoma_burkitts(Raji)59.15
MedullaOblongata86.6
OccipitalLobe60.25
OlfactoryBulb31.4
Ovary27.75
Pancreas6.3
PancreaticIslet39.25
ParietalLobe40.95
Pituitary53.4
Placenta18.95
Pons28.8
PrefrontalCortex136.55
Prostate31.45
Salivarygland30.7
SkeletalMuscle24.9
Skin7.65
SmoothMuscle17.85
Spinalcord47.35
SubthalamicNucleus42.1
SuperiorCervicalGanglion70.25
TemporalLobe87.9
Testis82.45
TestisGermCell72.2
TestisIntersitial72.45
TestisLeydigCell41.1
TestisSeminiferousTubule45.15
Thalamus67.15
Thymus28.3
Thyroid68.8
Tongue33.1
Tonsil25.75
Trachea17.35
TrigeminalGanglion20.25
Uterus30.35
UterusCorpus42.5
WholeBlood82.35
Wholebrain59.75
colon28.75
pineal_day59.08
pineal_night64.3
retina51.85
small_intestine41.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1390_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.89 ± 0.42
Basal Forebrain5.61 ± 0.27
Basal Part of Pons5.51 ± 0.3
Cerebellar Cortex5.49 ± 0.37
Cerebellar Nuclei5.57 ± 0.33
Claustrum5.67 ± 0.63
Epithalamus5.72 ± 0.28
Frontal Lobe5.59 ± 0.41
Globus Pallidus5.61 ± 0.45
Hypothalamus5.92 ± 0.44
Insula5.54 ± 0.37
Limbic Lobe5.46 ± 0.47
Mesencephalon5.65 ± 0.42
Myelencephalon5.57 ± 0.46
Occipital Lobe5.43 ± 0.42
Parietal Lobe5.72 ± 0.46
Pontine Tegmentum5.73 ± 0.51
Striatum5.84 ± 0.37
Subthalamus5.74 ± 0.24
Temporal Lobe5.79 ± 0.36
Thalamus5.47 ± 0.45
White Matter4.9 ± 0.19
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Snapc5CBCerebellum18.79
23.22
Snapc5CTXCerebral cortex25.35
18.88
Snapc5HIPHippocampal region15.8
16.11
Snapc5HPFHippocampal formation16.41
14.91
Snapc5HYHypothalamus9.29
7.27
Snapc5LSXLateral septal complex3.03
2
Snapc5MBMidbrain11.67
11.54
Snapc5MYMedulla18.52
21.71
Snapc5OLFOlfactory bulb39.43
32.74
Snapc5PPons14.28
18.49
Snapc5PALPallidum16.08
14.28
Snapc5RHPRetrohippocampal region16.68
12.68
Snapc5sAMYStriatum-like amygdalar nuclei29.02
20.48
Snapc5STRStriatum13.7
9.91
Snapc5STRdStriatum dorsal region11.23
8.15
Snapc5STRvStriatum ventral region19.27
13.45
Snapc5THThalamus15.95
13.46
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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