AutismKB 2.0

Annotation Detail for TNIP1


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Basic Information Top
Gene Symbol:TNIP1 ( ABIN-1,KIAA0113,NAF1,VAN )
Gene Full Name: TNFAIP3 interacting protein 1
Band: 5q33.1
Quick LinksEntrez ID:10318; OMIM: 607714; Uniprot ID:TNIP1_HUMAN; ENSEMBL ID: ENSG00000145901; HGNC ID: 16903
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst2 / 6231932
fetus30 / 56401253
neonate4 / 31097128
infant0 / 236200 
juvenile5 / 5555689
adult235 / 1939121121
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma2 / 17475114
breast (mammary gland) tumor14 / 94178148
cervical tumor3 / 3436687
chondrosarcoma13 / 82823156
colorectal tumor14 / 114246122
esophageal tumor1 / 1729057
gastrointestinal tumor14 / 119369117
germ cell tumor29 / 263845109
glioma22 / 106883205
head and neck tumor13 / 13630295
kidney tumor21 / 68959304
leukemia13 / 95842135
liver tumor19 / 96359197
lung tumor33 / 103127319
lymphoma24 / 71755334
non-neoplasia6 / 9725061
normal324 / 336030796
ovarian tumor9 / 76682117
pancreatic tumor35 / 104616334
primitive neuroectodermal tumor of the CNS10 / 12568079
prostate cancer9 / 10268087
retinoblastoma3 / 4635664
skin tumor10 / 12494980
soft tissue/muscle tissue tumor5 / 12519139
uterine tumor15 / 90257166
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland3 / 3319790
ascites7 / 40015174
bladder5 / 29757168
blood36 / 123478291
bone7 / 7165597
bone marrow3 / 4880161
brain85 / 110098977
cervix5 / 48171103
connective tissue16 / 149255107
ear0 / 162120 
embryonic tissue7 / 21572232
esophagus1 / 2020949
eye22 / 211054104
heart5 / 8962655
intestine36 / 234472153
kidney41 / 211777193
larynx0 / 241450 
liver21 / 207743101
lung70 / 336974207
lymph22 / 44270496
lymph node3 / 9161032
mammary gland25 / 153271163
mouth5 / 6705274
muscle6 / 10771555
nerve1 / 1576863
ovary9 / 10205188
pancreas43 / 214812200
parathyroid2 / 2053997
pharynx2 / 4132848
pituitary gland1 / 1658560
placenta32 / 280825113
prostate13 / 18934568
salivary gland7 / 20155347
skin30 / 210574142
spleen22 / 53952407
stomach13 / 96619134
testis16 / 33044248
thymus15 / 81131184
thyroid6 / 47473126
tonsil5 / 16999294
trachea1 / 5241319
umbilical cord0 / 136800 
uterus24 / 232878103
vascular5 / 5178096
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 207196_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts1008.3
Adipocyte129.65
AdrenalCortex63.5
Adrenalgland62.8
Amygdala35.9
Appendix50.5
AtrioventricularNode37.15
BDCA4+_DentriticCells435.3
Bonemarrow124.05
BronchialEpithelialCells235.95
CD105+_Endothelial99.05
CD14+_Monocytes424.7
CD19+_BCells(neg._sel.)454.45
CD33+_Myeloid370.95
CD34+265.45
CD4+_Tcells222.1
CD56+_NKCells338.75
CD71+_EarlyErythroid134.5
CD8+_Tcells185.2
CardiacMyocytes109.75
Caudatenucleus34.05
Cerebellum36.7
CerebellumPeduncles49.8
CiliaryGanglion38.95
CingulateCortex43.4
Colorectaladenocarcinoma423.25
DorsalRootGanglion35.7
FetalThyroid115.3
Fetalbrain52.4
Fetalliver37.95
Fetallung268.55
GlobusPallidus30.95
Heart479.3
Hypothalamus40.6
Kidney98.05
Leukemia_chronicMyelogenousK-56241.95
Leukemia_promyelocytic-HL-60295.3
Leukemialymphoblastic(MOLT-4)55.5
Liver291.35
Lung499.35
Lymphnode125.9
Lymphoma_burkitts(Daudi)130.7
Lymphoma_burkitts(Raji)1639.9
MedullaOblongata39.45
OccipitalLobe37.95
OlfactoryBulb36.65
Ovary31.45
Pancreas105.6
PancreaticIslet115.85
ParietalLobe45.8
Pituitary53.2
Placenta119
Pons44.3
PrefrontalCortex103.55
Prostate214.05
Salivarygland51.7
SkeletalMuscle64.65
Skin41.95
SmoothMuscle378
Spinalcord51.55
SubthalamicNucleus35.8
SuperiorCervicalGanglion51.8
TemporalLobe40.4
Testis52.6
TestisGermCell41.8
TestisIntersitial40.1
TestisLeydigCell45
TestisSeminiferousTubule32.55
Thalamus44.1
Thymus153.25
Thyroid288.15
Tongue113.5
Tonsil169.1
Trachea41.75
TrigeminalGanglion50.15
Uterus114.8
UterusCorpus42.85
WholeBlood660.9
Wholebrain48.2
colon167.55
pineal_day63.06
pineal_night56.16
retina123.275
small_intestine150.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P19036
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.88 ± 0.51
Basal Forebrain5.71 ± 0.62
Basal Part of Pons6.11 ± 0.48
Cerebellar Cortex5.63 ± 0.38
Cerebellar Nuclei6.17 ± 0.29
Claustrum6.45 ± 0.55
Epithalamus5.38 ± 0.57
Frontal Lobe5.61 ± 0.5
Globus Pallidus6.67 ± 0.36
Hypothalamus5.66 ± 0.37
Insula5.46 ± 0.56
Limbic Lobe5.87 ± 0.48
Mesencephalon5.9 ± 0.53
Myelencephalon5.79 ± 0.52
Occipital Lobe6.1 ± 0.44
Parietal Lobe5.88 ± 0.51
Pontine Tegmentum5.65 ± 0.46
Striatum5.6 ± 0.58
Subthalamus5.75 ± 0.64
Temporal Lobe5.68 ± 0.47
Thalamus5.67 ± 0.51
White Matter6.67 ± 0.65
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Tnip1RHPRetrohippocampal region100
100
Tnip1sAMYStriatum-like amygdalar nuclei94.59
78.82
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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