AutismKB 2.0

Annotation Detail for CDS1


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:CDS1 ( CDS )
Gene Full Name: CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1
Band: 4q21.23
Quick LinksEntrez ID:1040; OMIM: 603548; Uniprot ID:CDS1_HUMAN; ENSEMBL ID: ENSG00000163624; HGNC ID: 1800
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body6 / 7076184
blastocyst1 / 6231916
fetus11 / 56401219
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult84 / 193912143
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor4 / 11424635
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor10 / 26384537
glioma0 / 1068830 
head and neck tumor3 / 13630222
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal109 / 336030732
ovarian tumor7 / 7668291
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer3 / 10268029
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites1 / 4001524
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain15 / 110098913
cervix0 / 481710 
connective tissue0 / 1492550 
ear1 / 1621261
embryonic tissue7 / 21572232
esophagus0 / 202090 
eye6 / 21105428
heart0 / 896260 
intestine15 / 23447263
kidney25 / 211777118
larynx0 / 241450 
liver2 / 2077439
lung20 / 33697459
lymph0 / 442700 
lymph node0 / 916100 
mammary gland4 / 15327126
mouth1 / 6705214
muscle0 / 1077150 
nerve0 / 157680 
ovary7 / 10205168
pancreas10 / 21481246
parathyroid4 / 20539194
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta24 / 28082585
prostate8 / 18934542
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis19 / 33044257
thymus0 / 811310 
thyroid2 / 4747342
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205709_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.2
Adipocyte7
AdrenalCortex8.55
Adrenalgland7.8
Amygdala24.5
Appendix9.25
AtrioventricularNode6.65
BDCA4+_DentriticCells5.95
Bonemarrow7.7
BronchialEpithelialCells19.95
CD105+_Endothelial6.85
CD14+_Monocytes7.45
CD19+_BCells(neg._sel.)7.15
CD33+_Myeloid8.2
CD34+8.1
CD4+_Tcells6.4
CD56+_NKCells6.85
CD71+_EarlyErythroid6.55
CD8+_Tcells5.65
CardiacMyocytes11.6
Caudatenucleus8.55
Cerebellum12.2
CerebellumPeduncles14.45
CiliaryGanglion6.2
CingulateCortex14.5
Colorectaladenocarcinoma6.85
DorsalRootGanglion6.2
FetalThyroid22.65
Fetalbrain7.15
Fetalliver6.05
Fetallung5.4
GlobusPallidus10.45
Heart11.15
Hypothalamus9.9
Kidney7.75
Leukemia_chronicMyelogenousK-5626.2
Leukemia_promyelocytic-HL-606.15
Leukemialymphoblastic(MOLT-4)5.2
Liver11.5
Lung11.35
Lymphnode5.35
Lymphoma_burkitts(Daudi)9.25
Lymphoma_burkitts(Raji)10.7
MedullaOblongata8.75
OccipitalLobe17.8
OlfactoryBulb5.4
Ovary5.25
Pancreas6.55
PancreaticIslet7.8
ParietalLobe10.35
Pituitary8.6
Placenta20.85
Pons12.7
PrefrontalCortex60.1
Prostate17.65
Salivarygland5.9
SkeletalMuscle11.75
Skin10.1
SmoothMuscle8.1
Spinalcord7.4
SubthalamicNucleus21.15
SuperiorCervicalGanglion10.4
TemporalLobe9.5
Testis6.2
TestisGermCell7.1
TestisIntersitial6.15
TestisLeydigCell7.8
TestisSeminiferousTubule6.55
Thalamus12.1
Thymus5.25
Thyroid52.15
Tongue9.75
Tonsil6.8
Trachea19.45
TrigeminalGanglion8.35
Uterus5.35
UterusCorpus7.35
WholeBlood7.5
Wholebrain29.25
colon80.3
pineal_day12.16
pineal_night9.26
retina9.4
small_intestine294.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P938614
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.63 ± 0.27
Basal Forebrain8.41 ± 0.15
Basal Part of Pons9.79 ± 0.21
Cerebellar Cortex9.33 ± 0.2
Cerebellar Nuclei9.69 ± 0.53
Claustrum8.04 ± 0.5
Epithalamus9.16 ± 0.52
Frontal Lobe9.1 ± 0.52
Globus Pallidus8.15 ± 0.27
Hypothalamus8.61 ± 0.47
Insula8.96 ± 0.19
Limbic Lobe8.74 ± 0.44
Mesencephalon8.82 ± 0.51
Myelencephalon8.93 ± 0.6
Occipital Lobe9.21 ± 0.43
Parietal Lobe9.22 ± 0.43
Pontine Tegmentum8.91 ± 0.43
Striatum8.4 ± 0.41
Subthalamus9.97 ± 0.21
Temporal Lobe8.91 ± 0.37
Thalamus9.31 ± 0.56
White Matter6.11 ± 0.3
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Cds1CBCerebellum49.01
100
Cds1CTXCerebral cortex100
100
Cds1HIPHippocampal region69.14
88.57
Cds1HPFHippocampal formation88.2
100
Cds1HYHypothalamus48.95
49.01
Cds1LSXLateral septal complex100
100
Cds1MBMidbrain74.47
87.91
Cds1MYMedulla75.05
100
Cds1OLFOlfactory bulb97.95
100
Cds1PPons69.48
98.28
Cds1PALPallidum55.95
73.66
Cds1RHPRetrohippocampal region100
100
Cds1sAMYStriatum-like amygdalar nuclei58.13
54.31
Cds1STRStriatum47.37
41.99
Cds1STRdStriatum dorsal region37.63
30.98
Cds1STRvStriatum ventral region49.55
39.36
Cds1THThalamus98.22
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00429330 18 426 443 VLQQLLVLQPEQQLNIYK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved