AutismKB 2.0

Annotation Detail for ST3GAL6


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Basic Information Top
Gene Symbol:ST3GAL6 ( SIAT10,ST3GALVI )
Gene Full Name: ST3 beta-galactoside alpha-2,3-sialyltransferase 6
Band: 3q12.1
Quick LinksEntrez ID:10402; OMIM: 607156; Uniprot ID:SIA10_HUMAN; ENSEMBL ID: ENSG00000064225; HGNC ID: 18080
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst2 / 6231932
fetus18 / 56401231
neonate4 / 31097128
infant0 / 236200 
juvenile2 / 5555635
adult49 / 193912125
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor1 / 3436629
chondrosarcoma1 / 8282312
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor7 / 26384526
glioma3 / 10688328
head and neck tumor4 / 13630229
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma1 / 7175513
non-neoplasia0 / 972500 
normal114 / 336030733
ovarian tumor2 / 7668226
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor16 / 124949128
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland2 / 3319760
ascites0 / 400150 
bladder0 / 297570 
blood2 / 12347816
bone0 / 716550 
bone marrow1 / 4880120
brain26 / 110098923
cervix1 / 4817120
connective tissue1 / 1492556
ear1 / 1621261
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye1 / 2110544
heart3 / 8962633
intestine1 / 2344724
kidney11 / 21177751
larynx0 / 241450 
liver7 / 20774333
lung15 / 33697444
lymph0 / 442700 
lymph node0 / 916100 
mammary gland1 / 1532716
mouth4 / 6705259
muscle1 / 1077159
nerve1 / 1576863
ovary3 / 10205129
pancreas8 / 21481237
parathyroid0 / 205390 
pharynx3 / 4132872
pituitary gland1 / 1658560
placenta21 / 28082574
prostate3 / 18934515
salivary gland0 / 201550 
skin21 / 21057499
spleen0 / 539520 
stomach0 / 966190 
testis2 / 3304426
thymus6 / 8113173
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord4 / 13680292
uterus2 / 2328788
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 213355_at
Cell line Expression level Expression bar
721_B_lymphoblasts9.6
Adipocyte7.95
AdrenalCortex11.9
Adrenalgland7.3
Amygdala8.6
Appendix12.7
AtrioventricularNode8.6
BDCA4+_DentriticCells9.2
Bonemarrow9.1
BronchialEpithelialCells7.5
CD105+_Endothelial7.95
CD14+_Monocytes9.25
CD19+_BCells(neg._sel.)8.05
CD33+_Myeloid15.05
CD34+13.25
CD4+_Tcells7.9
CD56+_NKCells8.95
CD71+_EarlyErythroid7.65
CD8+_Tcells6.65
CardiacMyocytes15.45
Caudatenucleus7.4
Cerebellum6.8
CerebellumPeduncles10.15
CiliaryGanglion7.65
CingulateCortex8.75
Colorectaladenocarcinoma8.05
DorsalRootGanglion7.6
FetalThyroid8.2
Fetalbrain7.9
Fetalliver7.45
Fetallung6.4
GlobusPallidus7.05
Heart13.8
Hypothalamus8.45
Kidney8
Leukemia_chronicMyelogenousK-5627.3
Leukemia_promyelocytic-HL-607.15
Leukemialymphoblastic(MOLT-4)6.2
Liver14.7
Lung8.65
Lymphnode6.7
Lymphoma_burkitts(Daudi)10.9
Lymphoma_burkitts(Raji)12.7
MedullaOblongata7.35
OccipitalLobe7.35
OlfactoryBulb6.4
Ovary6.5
Pancreas6.9
PancreaticIslet8.8
ParietalLobe9.6
Pituitary9.5
Placenta19.8
Pons8.15
PrefrontalCortex9.35
Prostate9.3
Salivarygland7
SkeletalMuscle15.6
Skin7.8
SmoothMuscle9.2
Spinalcord12.1
SubthalamicNucleus8
SuperiorCervicalGanglion12.85
TemporalLobe7.6
Testis6.95
TestisGermCell6.4
TestisIntersitial6.95
TestisLeydigCell8.45
TestisSeminiferousTubule7
Thalamus8.45
Thymus6.2
Thyroid9.6
Tongue9.4
Tonsil8
Trachea6.8
TrigeminalGanglion10.4
Uterus6.45
UterusCorpus8.55
WholeBlood13.55
Wholebrain7.4
colon8.05
pineal_day9.54
pineal_night9.44
retina10.025
small_intestine7.65
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_6402_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.41 ± 0.5
Basal Forebrain4.67 ± 0.42
Basal Part of Pons5.53 ± 0.38
Cerebellar Cortex5.88 ± 0.32
Cerebellar Nuclei5.92 ± 0.46
Claustrum5.28 ± 0.63
Epithalamus5.58 ± 0.4
Frontal Lobe5.35 ± 0.45
Globus Pallidus5.77 ± 0.46
Hypothalamus5.52 ± 0.29
Insula5.32 ± 0.31
Limbic Lobe5.47 ± 0.62
Mesencephalon5.63 ± 0.47
Myelencephalon5.62 ± 0.45
Occipital Lobe6.31 ± 0.54
Parietal Lobe5.61 ± 0.39
Pontine Tegmentum5.57 ± 0.58
Striatum5.15 ± 0.53
Subthalamus5.8 ± 0.46
Temporal Lobe5.46 ± 0.5
Thalamus5.37 ± 0.48
White Matter5.26 ± 0.25
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
St3gal6CBCerebellum14.58
22.35
St3gal6CTXCerebral cortex8.64
7.23
St3gal6HIPHippocampal region3.5
4.22
St3gal6HPFHippocampal formation4.83
4.87
St3gal6HYHypothalamus0.55
0.6
St3gal6LSXLateral septal complex1.81
1.92
St3gal6MBMidbrain5.99
8.5
St3gal6MYMedulla15.71
21.1
St3gal6OLFOlfactory bulb3.23
3.4
St3gal6PPons10.47
14.14
St3gal6PALPallidum1.34
1.58
St3gal6RHPRetrohippocampal region7.03
5.81
St3gal6sAMYStriatum-like amygdalar nuclei2.02
2.03
St3gal6STRStriatum1.73
1.81
St3gal6STRdStriatum dorsal region1.42
1.5
St3gal6STRvStriatum ventral region1.67
1.76
St3gal6THThalamus1.87
2.23
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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