AutismKB 2.0

Annotation Detail for CD52


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Basic Information Top
Gene Symbol:CD52 ( CDW52 )
Gene Full Name: CD52 molecule
Band: 1p36.11
Quick LinksEntrez ID:1043; OMIM: 114280; Uniprot ID:CD52_HUMAN; ENSEMBL ID: ENSG00000169442; HGNC ID: 1804
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus25 / 56401244
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult55 / 193912128
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia2 / 9584220
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma4 / 7175555
non-neoplasia0 / 972500 
normal205 / 336030761
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites0 / 400150 
bladder0 / 297570 
blood22 / 123478178
bone0 / 716550 
bone marrow2 / 4880140
brain2 / 11009891
cervix0 / 481710 
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye4 / 21105418
heart3 / 8962633
intestine1 / 2344724
kidney1 / 2117774
larynx0 / 241450 
liver0 / 2077430 
lung8 / 33697423
lymph1 / 4427022
lymph node3 / 9161032
mammary gland1 / 1532716
mouth0 / 670520 
muscle2 / 10771518
nerve0 / 157680 
ovary0 / 1020510 
pancreas5 / 21481223
parathyroid0 / 205390 
pharynx8 / 41328193
pituitary gland0 / 165850 
placenta6 / 28082521
prostate7 / 18934536
salivary gland0 / 201550 
skin0 / 2105740 
spleen3 / 5395255
stomach0 / 966190 
testis14 / 33044242
thymus3 / 8113136
thyroid0 / 474730 
tonsil1 / 1699958
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 34210_at
Cell line Expression level Expression bar
721_B_lymphoblasts413.65
Adipocyte6.9
AdrenalCortex8.4
Adrenalgland6.15
Amygdala6.4
Appendix8.2
AtrioventricularNode7.55
BDCA4+_DentriticCells950.35
Bonemarrow102.75
BronchialEpithelialCells7.15
CD105+_Endothelial43.8
CD14+_Monocytes1530.6
CD19+_BCells(neg._sel.)4319.85
CD33+_Myeloid1969.75
CD34+272.55
CD4+_Tcells2435.9
CD56+_NKCells1962.9
CD71+_EarlyErythroid6.5
CD8+_Tcells2374.75
CardiacMyocytes10.25
Caudatenucleus6.15
Cerebellum5.55
CerebellumPeduncles8.35
CiliaryGanglion5.9
CingulateCortex7.45
Colorectaladenocarcinoma6.75
DorsalRootGanglion6.4
FetalThyroid6.95
Fetalbrain6.6
Fetalliver6.2
Fetallung6.35
GlobusPallidus5.65
Heart81.4
Hypothalamus7.25
Kidney6.15
Leukemia_chronicMyelogenousK-56258
Leukemia_promyelocytic-HL-6010.85
Leukemialymphoblastic(MOLT-4)5.45
Liver10.25
Lung744.45
Lymphnode1110.7
Lymphoma_burkitts(Daudi)660.35
Lymphoma_burkitts(Raji)57.85
MedullaOblongata6.35
OccipitalLobe6.3
OlfactoryBulb5.45
Ovary5.05
Pancreas6.15
PancreaticIslet7.4
ParietalLobe7.8
Pituitary8
Placenta7.2
Pons6.9
PrefrontalCortex8.9
Prostate11.35
Salivarygland77.4
SkeletalMuscle12.7
Skin6.6
SmoothMuscle7.8
Spinalcord7.3
SubthalamicNucleus6.65
SuperiorCervicalGanglion11.6
TemporalLobe8.4
Testis6.45
TestisGermCell687.55
TestisIntersitial5.9
TestisLeydigCell1522.7
TestisSeminiferousTubule5.95
Thalamus7.25
Thymus1472
Thyroid9.05
Tongue8.25
Tonsil556.85
Trachea7
TrigeminalGanglion8.8
Uterus5.35
UterusCorpus6.95
WholeBlood2263.2
Wholebrain5.3
colon8.05
pineal_day10.42
pineal_night8.34
retina11.825
small_intestine18.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_9098_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.97 ± 0.91
Basal Forebrain3.06 ± 0.33
Basal Part of Pons3.72 ± 0.46
Cerebellar Cortex2.29 ± 0.45
Cerebellar Nuclei2.87 ± 0.54
Claustrum5.49 ± 0.66
Epithalamus3.46 ± 0.54
Frontal Lobe3.42 ± 0.75
Globus Pallidus3.29 ± 0.8
Hypothalamus2.78 ± 0.47
Insula3.49 ± 0.51
Limbic Lobe3.17 ± 0.9
Mesencephalon3.07 ± 0.76
Myelencephalon3.16 ± 0.76
Occipital Lobe2.53 ± 0.98
Parietal Lobe3.04 ± 0.92
Pontine Tegmentum3.33 ± 1.16
Striatum3.99 ± 0.81
Subthalamus2.75 ± 0.84
Temporal Lobe3.32 ± 0.82
Thalamus2.67 ± 0.68
White Matter1.82 ± 0.72
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Cd52CBCerebellum9.38
14.41
Cd52CTXCerebral cortex2.96
2.34
Cd52HIPHippocampal region1.65
1.65
Cd52HPFHippocampal formation4.54
3.91
Cd52HYHypothalamus0.09
0.15
Cd52LSXLateral septal complex0.22
0.23
Cd52MBMidbrain1.31
2.31
Cd52MYMedulla4.55
5.54
Cd52OLFOlfactory bulb2.41
1.88
Cd52PPons0.74
1.16
Cd52PALPallidum0.4
0.35
Cd52RHPRetrohippocampal region9
6.79
Cd52sAMYStriatum-like amygdalar nuclei0.38
0.47
Cd52STRStriatum0.9
0.96
Cd52STRdStriatum dorsal region0.71
0.69
Cd52STRvStriatum ventral region2.08
2.32
Cd52THThalamus0.62
0.67
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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