AutismKB 2.0

Annotation Detail for OLFM1


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Basic Information Top
Gene Symbol:OLFM1 ( AMY,NOE1,NOELIN1,OlfA )
Gene Full Name: olfactomedin 1
Band: 9q34.3
Quick LinksEntrez ID:10439; OMIM: 605366; Uniprot ID:NOE1_HUMAN; ENSEMBL ID: ENSG00000130558; HGNC ID: 17187
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus41 / 56401272
neonate0 / 310970 
infant3 / 23620127
juvenile5 / 5555689
adult59 / 193912130
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor2 / 3436658
chondrosarcoma1 / 8282312
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor16 / 26384560
glioma9 / 10688384
head and neck tumor3 / 13630222
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal358 / 3360307106
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS10 / 12568079
prostate cancer2 / 10268019
retinoblastoma16 / 46356345
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone2 / 7165527
bone marrow0 / 488010 
brain128 / 1100989116
cervix2 / 4817141
connective tissue1 / 1492556
ear3 / 16212185
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye27 / 211054127
heart0 / 896260 
intestine1 / 2344724
kidney3 / 21177714
larynx0 / 241450 
liver0 / 2077430 
lung2 / 3369745
lymph0 / 442700 
lymph node0 / 916100 
mammary gland2 / 15327113
mouth1 / 6705214
muscle0 / 1077150 
nerve5 / 15768317
ovary0 / 1020510 
pancreas7 / 21481232
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland3 / 16585180
placenta0 / 2808250 
prostate7 / 18934536
salivary gland2 / 2015599
skin0 / 2105740 
spleen2 / 5395237
stomach2 / 9661920
testis5 / 33044215
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus4 / 23287817
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205591_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.5
Adipocyte4.55
AdrenalCortex5.1
Adrenalgland4
Amygdala3571.15
Appendix4.8
AtrioventricularNode4.45
BDCA4+_DentriticCells4.9
Bonemarrow4.7
BronchialEpithelialCells4.5
CD105+_Endothelial4.65
CD14+_Monocytes4.95
CD19+_BCells(neg._sel.)4.8
CD33+_Myeloid5.85
CD34+5.65
CD4+_Tcells4.85
CD56+_NKCells5.3
CD71+_EarlyErythroid4.3
CD8+_Tcells4.3
CardiacMyocytes6.25
Caudatenucleus30.85
Cerebellum337.1
CerebellumPeduncles374.45
CiliaryGanglion6.25
CingulateCortex2755.3
Colorectaladenocarcinoma4.7
DorsalRootGanglion13.1
FetalThyroid4.5
Fetalbrain210.15
Fetalliver4.05
Fetallung3.7
GlobusPallidus1522.45
Heart6.3
Hypothalamus231.3
Kidney3.85
Leukemia_chronicMyelogenousK-5624.2
Leukemia_promyelocytic-HL-604.1
Leukemialymphoblastic(MOLT-4)3.65
Liver6.25
Lung5
Lymphnode3.95
Lymphoma_burkitts(Daudi)6
Lymphoma_burkitts(Raji)6.55
MedullaOblongata1784.15
OccipitalLobe2206.35
OlfactoryBulb4.7
Ovary3.3
Pancreas3.8
PancreaticIslet5.4
ParietalLobe1668.05
Pituitary51.55
Placenta4.65
Pons1007.9
PrefrontalCortex3123.85
Prostate6.15
Salivarygland3.75
SkeletalMuscle5.55
Skin3.75
SmoothMuscle5.25
Spinalcord6.5
SubthalamicNucleus2435.9
SuperiorCervicalGanglion5.55
TemporalLobe2924.2
Testis3.95
TestisGermCell3.7
TestisIntersitial3.9
TestisLeydigCell4.6
TestisSeminiferousTubule3.9
Thalamus227.4
Thymus3.7
Thyroid5.75
Tongue4.7
Tonsil4.55
Trachea3.9
TrigeminalGanglion4.85
Uterus3.95
UterusCorpus4.25
WholeBlood5
Wholebrain4659.2
colon4.65
pineal_day312.56
pineal_night395.78
retina5.725
small_intestine4.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_2109_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala11.24 ± 0.9
Basal Forebrain9.78 ± 0.26
Basal Part of Pons10.92 ± 0.2
Cerebellar Cortex10.36 ± 0.22
Cerebellar Nuclei9.66 ± 0.65
Claustrum11.28 ± 0.47
Epithalamus9.53 ± 0.8
Frontal Lobe10.68 ± 0.6
Globus Pallidus8.74 ± 0.87
Hypothalamus9.85 ± 0.47
Insula10.8 ± 0.37
Limbic Lobe11.03 ± 0.72
Mesencephalon10.12 ± 0.68
Myelencephalon10.39 ± 0.68
Occipital Lobe10.81 ± 0.4
Parietal Lobe10.83 ± 0.62
Pontine Tegmentum10.37 ± 0.53
Striatum9.15 ± 1.02
Subthalamus10.02 ± 0.47
Temporal Lobe11.01 ± 0.39
Thalamus10.2 ± 0.45
White Matter8.71 ± 0.75
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Olfm1CBCerebellum100
100
Olfm1CTXCerebral cortex100
100
Olfm1HIPHippocampal region100
100
Olfm1HPFHippocampal formation100
100
Olfm1HYHypothalamus100
100
Olfm1LSXLateral septal complex90.65
81.87
Olfm1MBMidbrain100
100
Olfm1MYMedulla100
100
Olfm1OLFOlfactory bulb100
100
Olfm1PPons100
100
Olfm1PALPallidum100
100
Olfm1RHPRetrohippocampal region100
100
Olfm1sAMYStriatum-like amygdalar nuclei100
100
Olfm1STRStriatum55.02
60.51
Olfm1STRdStriatum dorsal region26.16
36.56
Olfm1STRvStriatum ventral region83.28
77.17
Olfm1THThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00024866 28 165 192 EEVQNLTSVLNELQEEIGAYDYDELQSR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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