AutismKB 2.0

Annotation Detail for ZNHIT1


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Basic Information Top
Gene Symbol:ZNHIT1 ( CG1I,ZNFN4A1 )
Gene Full Name: zinc finger, HIT-type containing 1
Band: 7q22.1
Quick LinksEntrez ID:10467; OMIM: NA; Uniprot ID:ZNHI1_HUMAN; ENSEMBL ID: ENSG00000106400; HGNC ID: 21688
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst1 / 6231916
fetus24 / 56401242
neonate2 / 3109764
infant0 / 236200 
juvenile3 / 5555653
adult154 / 193912179
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor10 / 94178106
cervical tumor1 / 3436629
chondrosarcoma6 / 8282372
colorectal tumor21 / 114246183
esophageal tumor0 / 172900 
gastrointestinal tumor9 / 11936975
germ cell tumor16 / 26384560
glioma12 / 106883112
head and neck tumor14 / 136302102
kidney tumor6 / 6895987
leukemia2 / 9584220
liver tumor19 / 96359197
lung tumor8 / 10312777
lymphoma3 / 7175541
non-neoplasia6 / 9725061
normal171 / 336030750
ovarian tumor13 / 76682169
pancreatic tumor8 / 10461676
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer10 / 10268097
retinoblastoma5 / 46356107
skin tumor29 / 124949232
soft tissue/muscle tissue tumor8 / 12519163
uterine tumor7 / 9025777
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland3 / 3319790
ascites4 / 4001599
bladder1 / 2975733
blood3 / 12347824
bone13 / 71655181
bone marrow1 / 4880120
brain40 / 110098936
cervix2 / 4817141
connective tissue8 / 14925553
ear0 / 162120 
embryonic tissue19 / 21572288
esophagus0 / 202090 
eye20 / 21105494
heart3 / 8962633
intestine30 / 234472127
kidney12 / 21177756
larynx1 / 2414541
liver25 / 207743120
lung22 / 33697465
lymph2 / 4427045
lymph node6 / 9161065
mammary gland10 / 15327165
mouth2 / 6705229
muscle9 / 10771583
nerve1 / 1576863
ovary15 / 102051146
pancreas27 / 214812125
parathyroid2 / 2053997
pharynx5 / 41328120
pituitary gland1 / 1658560
placenta22 / 28082578
prostate15 / 18934579
salivary gland2 / 2015599
skin33 / 210574156
spleen1 / 5395218
stomach6 / 9661962
testis6 / 33044218
thymus2 / 8113124
thyroid5 / 47473105
tonsil2 / 16999117
trachea0 / 524130 
umbilical cord2 / 13680146
uterus13 / 23287855
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201541_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts82.1
Adipocyte128.75
AdrenalCortex32.45
Adrenalgland47.85
Amygdala63.3
Appendix30.4
AtrioventricularNode20.2
BDCA4+_DentriticCells124.05
Bonemarrow41.1
BronchialEpithelialCells170.8
CD105+_Endothelial80.75
CD14+_Monocytes116.1
CD19+_BCells(neg._sel.)55.5
CD33+_Myeloid92.4
CD34+66.85
CD4+_Tcells55.3
CD56+_NKCells106.5
CD71+_EarlyErythroid76.8
CD8+_Tcells50.2
CardiacMyocytes107.4
Caudatenucleus33.15
Cerebellum32
CerebellumPeduncles48.3
CiliaryGanglion6.75
CingulateCortex30.25
Colorectaladenocarcinoma280.3
DorsalRootGanglion22.8
FetalThyroid56.6
Fetalbrain30.4
Fetalliver46.5
Fetallung63.85
GlobusPallidus15.9
Heart310.35
Hypothalamus67.8
Kidney74.65
Leukemia_chronicMyelogenousK-56258.4
Leukemia_promyelocytic-HL-6033.35
Leukemialymphoblastic(MOLT-4)93.8
Liver932.1
Lung320.05
Lymphnode27.9
Lymphoma_burkitts(Daudi)36.5
Lymphoma_burkitts(Raji)84.7
MedullaOblongata37.05
OccipitalLobe31.4
OlfactoryBulb38.6
Ovary18.85
Pancreas39.9
PancreaticIslet61.45
ParietalLobe35.35
Pituitary48.7
Placenta54.65
Pons23.05
PrefrontalCortex45.55
Prostate208.7
Salivarygland29.9
SkeletalMuscle36
Skin8.5
SmoothMuscle178.95
Spinalcord48.6
SubthalamicNucleus26.3
SuperiorCervicalGanglion41.9
TemporalLobe40.45
Testis44
TestisGermCell30.15
TestisIntersitial33.5
TestisLeydigCell21.6
TestisSeminiferousTubule23.25
Thalamus34.5
Thymus112.75
Thyroid197.35
Tongue29.8
Tonsil44.7
Trachea36.75
TrigeminalGanglion13.65
Uterus94.25
UterusCorpus47.8
WholeBlood72.65
Wholebrain176.7
colon187.15
pineal_day53.84
pineal_night45.88
retina56.175
small_intestine138.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_5755_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.62 ± 1.03
Basal Forebrain2.6 ± 0.96
Basal Part of Pons1.69 ± 0.48
Cerebellar Cortex2.04 ± 0.97
Cerebellar Nuclei2.58 ± 0.71
Claustrum3.02 ± 0.9
Epithalamus1.84 ± 0.71
Frontal Lobe2.22 ± 0.82
Globus Pallidus2.71 ± 0.49
Hypothalamus2.26 ± 0.65
Insula1.74 ± 0.47
Limbic Lobe2.1 ± 0.74
Mesencephalon2.42 ± 0.83
Myelencephalon2.2 ± 0.72
Occipital Lobe1.97 ± 0.66
Parietal Lobe2.33 ± 0.86
Pontine Tegmentum2.3 ± 0.77
Striatum2.26 ± 0.84
Subthalamus2.28 ± 0.75
Temporal Lobe2.09 ± 0.77
Thalamus2.17 ± 0.69
White Matter2.23 ± 0.12
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Znhit1CBCerebellum19.21
21.82
Znhit1CTXCerebral cortex50.14
35.67
Znhit1HIPHippocampal region28.06
27.84
Znhit1HPFHippocampal formation36.49
32.61
Znhit1HYHypothalamus14.43
11.17
Znhit1LSXLateral septal complex11.26
7.9
Znhit1MBMidbrain23.98
21.64
Znhit1MYMedulla38.92
42.13
Znhit1OLFOlfactory bulb41.69
32.07
Znhit1PPons30.15
31.12
Znhit1PALPallidum23.1
21.78
Znhit1RHPRetrohippocampal region52.56
40.63
Znhit1sAMYStriatum-like amygdalar nuclei36.4
26.67
Znhit1STRStriatum30.29
20.79
Znhit1STRdStriatum dorsal region33.22
22.87
Znhit1STRvStriatum ventral region23.65
15.6
Znhit1THThalamus32.89
26.45
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
ZNHI1_HUMAN_2 8 2 9 VEKKTSVR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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