AutismKB 2.0

Annotation Detail for ZNF238


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Basic Information Top
Gene Symbol:ZNF238 ( C2H2-171,RP58,TAZ-1,ZBTB18 )
Gene Full Name: zinc finger protein 238
Band: 1q44-qter
Quick LinksEntrez ID:10472; OMIM: 608433; Uniprot ID:ZN238_HUMAN; ENSEMBL ID: ENSG00000179456; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus54 / 56401295
neonate0 / 310970 
infant2 / 2362084
juvenile1 / 5555617
adult32 / 193912116
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor1 / 3436629
chondrosarcoma3 / 8282336
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor14 / 26384553
glioma1 / 1068839
head and neck tumor3 / 13630222
kidney tumor0 / 689590 
leukemia4 / 9584241
liver tumor3 / 9635931
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal132 / 336030739
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma6 / 46356129
skin tumor1 / 1249498
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood2 / 12347816
bone3 / 7165541
bone marrow0 / 488010 
brain99 / 110098989
cervix1 / 4817120
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue5 / 21572223
esophagus0 / 202090 
eye12 / 21105456
heart5 / 8962655
intestine4 / 23447217
kidney3 / 21177714
larynx1 / 2414541
liver4 / 20774319
lung11 / 33697432
lymph0 / 442700 
lymph node1 / 9161010
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve1 / 1576863
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta3 / 28082510
prostate1 / 1893455
salivary gland0 / 201550 
skin2 / 2105749
spleen0 / 539520 
stomach1 / 9661910
testis8 / 33044224
thymus1 / 8113112
thyroid2 / 4747342
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 207164_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.55
Adipocyte6.8
AdrenalCortex8.3
Adrenalgland6.25
Amygdala36.05
Appendix9.9
AtrioventricularNode6.5
BDCA4+_DentriticCells7.75
Bonemarrow7.2
BronchialEpithelialCells7
CD105+_Endothelial7.15
CD14+_Monocytes8.9
CD19+_BCells(neg._sel.)7.85
CD33+_Myeloid9.15
CD34+8.45
CD4+_Tcells7.7
CD56+_NKCells8.45
CD71+_EarlyErythroid6.7
CD8+_Tcells6.9
CardiacMyocytes10.75
Caudatenucleus6.45
Cerebellum166.4
CerebellumPeduncles39.65
CiliaryGanglion8.15
CingulateCortex8.8
Colorectaladenocarcinoma7.05
DorsalRootGanglion7.35
FetalThyroid6.95
Fetalbrain16.5
Fetalliver6.2
Fetallung5.55
GlobusPallidus5.9
Heart10.3
Hypothalamus7.5
Kidney6.05
Leukemia_chronicMyelogenousK-5626.2
Leukemia_promyelocytic-HL-606.2
Leukemialymphoblastic(MOLT-4)5.45
Liver10.5
Lung7.75
Lymphnode5.95
Lymphoma_burkitts(Daudi)9.2
Lymphoma_burkitts(Raji)10.8
MedullaOblongata6.5
OccipitalLobe9.45
OlfactoryBulb5.45
Ovary5.1
Pancreas5.75
PancreaticIslet7.5
ParietalLobe7.85
Pituitary8.05
Placenta6.8
Pons6.95
PrefrontalCortex14.25
Prostate8.25
Salivarygland5.85
SkeletalMuscle10.7
Skin6.25
SmoothMuscle7.95
Spinalcord7.65
SubthalamicNucleus8.1
SuperiorCervicalGanglion10.85
TemporalLobe6.65
Testis6.1
TestisGermCell5.75
TestisIntersitial8.3
TestisLeydigCell7.65
TestisSeminiferousTubule6.15
Thalamus7.25
Thymus5.55
Thyroid8.9
Tongue7.7
Tonsil6.95
Trachea5.65
TrigeminalGanglion11.2
Uterus5.8
UterusCorpus6.85
WholeBlood7.8
Wholebrain31.85
colon7.2
pineal_day11.7
pineal_night19.84
retina9.1
small_intestine6.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P200512
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.7 ± 0.74
Basal Forebrain8.04 ± 0.31
Basal Part of Pons9.38 ± 0.31
Cerebellar Cortex9.48 ± 0.27
Cerebellar Nuclei7.98 ± 0.61
Claustrum9.61 ± 0.89
Epithalamus8.11 ± 0.4
Frontal Lobe8.49 ± 0.69
Globus Pallidus7.11 ± 0.4
Hypothalamus7.49 ± 0.23
Insula8.58 ± 0.72
Limbic Lobe9.65 ± 0.74
Mesencephalon8.32 ± 0.51
Myelencephalon8.63 ± 0.56
Occipital Lobe9.34 ± 0.68
Parietal Lobe8.83 ± 0.78
Pontine Tegmentum8.4 ± 0.72
Striatum7.93 ± 0.51
Subthalamus7.78 ± 0.36
Temporal Lobe8.86 ± 0.62
Thalamus8.27 ± 0.43
White Matter6.64 ± 0.52
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Zfp238CBCerebellum26.12
14.79
Zfp238CTXCerebral cortex23.81
11.31
Zfp238HIPHippocampal region45.1
21.81
Zfp238HPFHippocampal formation35.91
17.41
Zfp238HYHypothalamus5.34
2.79
Zfp238LSXLateral septal complex5.63
2.37
Zfp238MBMidbrain6.14
3.56
Zfp238MYMedulla18.51
12.24
Zfp238OLFOlfactory bulb24.91
10.74
Zfp238PPons13.62
8.4
Zfp238PALPallidum6.3
3.24
Zfp238RHPRetrohippocampal region21.75
11.63
Zfp238sAMYStriatum-like amygdalar nuclei10.72
4.96
Zfp238STRStriatum7.16
3.04
Zfp238STRdStriatum dorsal region4.7
1.97
Zfp238STRvStriatum ventral region15.25
6.04
Zfp238THThalamus7.66
3.79
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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