Annotation Detail for SLC25A17
Basic Information Top
| Gene Symbol: | SLC25A17 ( PMP34 ) |
|---|---|
| Gene Full Name: | solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17 |
| Band: | 22q13.2 |
| Quick Links | Entrez ID:10478; OMIM: 606795; Uniprot ID:PM34_HUMAN; ENSEMBL ID: ENSG00000100372; HGNC ID: 10987 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.474938
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 6 / 62319 | 96 |  |
| fetus | 17 / 564012 | 30 | |
| neonate | 1 / 31097 | 32 | |
| infant | 5 / 23620 | 211 |  |
| juvenile | 3 / 55556 | 53 | |
| adult | 78 / 1939121 | 40 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 8 / 94178 | 84 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 15 / 263845 | 56 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 8 / 95842 | 83 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 156 / 3360307 | 46 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 13 / 125680 | 103 | |
| prostate cancer | 7 / 102680 | 68 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 17 / 124949 | 136 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 4 / 33197 | 120 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 1 / 29757 | 33 | |
| blood | 7 / 123478 | 56 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 4 / 48801 | 81 | |
| brain | 69 / 1100989 | 62 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 8 / 149255 | 53 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 12 / 215722 | 55 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 5 / 211054 | 23 | |
| heart | 5 / 89626 | 55 | |
| intestine | 8 / 234472 | 34 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 0 / 24145 | 0 | |
| liver | 4 / 207743 | 19 | |
| lung | 6 / 336974 | 17 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 8 / 153271 | 52 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 13 / 280825 | 46 | |
| prostate | 12 / 189345 | 63 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 20 / 210574 | 94 | |
| spleen | 4 / 53952 | 74 | |
| stomach | 4 / 96619 | 41 | |
| testis | 17 / 330442 | 51 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 4 / 52413 | 76 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 16 / 232878 | 68 | |
| vascular | 1 / 51780 | 19 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 214210_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 12.9 | |
| Adipocyte | 6.25 | |
| AdrenalCortex | 6.75 | |
| Adrenalgland | 5.35 | |
| Amygdala | 6.05 | |
| Appendix | 6.15 | |
| AtrioventricularNode | 4.8 | |
| BDCA4+_DentriticCells | 6.4 | |
| Bonemarrow | 5.9 | |
| BronchialEpithelialCells | 5.7 | |
| CD105+_Endothelial | 5.9 | |
| CD14+_Monocytes | 6.15 | |
| CD19+_BCells(neg._sel.) | 6.15 | |
| CD33+_Myeloid | 7.2 | |
| CD34+ | 10.7 | |
| CD4+_Tcells | 6.1 | |
| CD56+_NKCells | 6.65 | |
| CD71+_EarlyErythroid | 5.55 | |
| CD8+_Tcells | 5.85 | |
| CardiacMyocytes | 8.25 | |
| Caudatenucleus | 5.25 | |
| Cerebellum | 4.8 | |
| CerebellumPeduncles | 7.25 | |
| CiliaryGanglion | 4.2 | |
| CingulateCortex | 6.1 | |
| Colorectaladenocarcinoma | 5.8 | |
| DorsalRootGanglion | 4.8 | |
| FetalThyroid | 5.75 | |
| Fetalbrain | 5.65 | |
| Fetalliver | 5.2 | |
| Fetallung | 4.75 | |
| GlobusPallidus | 4.35 | |
| Heart | 8.2 | |
| Hypothalamus | 6.55 | |
| Kidney | 5 | |
| Leukemia_chronicMyelogenousK-562 | 5.25 | |
| Leukemia_promyelocytic-HL-60 | 5.15 | |
| Leukemialymphoblastic(MOLT-4) | 5.55 | |
| Liver | 8.7 | |
| Lung | 6.2 | |
| Lymphnode | 4.9 | |
| Lymphoma_burkitts(Daudi) | 7.5 | |
| Lymphoma_burkitts(Raji) | 8.05 | |
| MedullaOblongata | 5.3 | |
| OccipitalLobe | 5.15 | |
| OlfactoryBulb | 4.5 | |
| Ovary | 4.15 | |
| Pancreas | 4.7 | |
| PancreaticIslet | 6.15 | |
| ParietalLobe | 6.45 | |
| Pituitary | 6.85 | |
| Placenta | 5.9 | |
| Pons | 5.75 | |
| PrefrontalCortex | 7 | |
| Prostate | 6.7 | |
| Salivarygland | 4.75 | |
| SkeletalMuscle | 7.75 | |
| Skin | 4.85 | |
| SmoothMuscle | 6.5 | |
| Spinalcord | 7.1 | |
| SubthalamicNucleus | 5.5 | |
| SuperiorCervicalGanglion | 7.2 | |
| TemporalLobe | 6 | |
| Testis | 5.6 | |
| TestisGermCell | 5.1 | |
| TestisIntersitial | 5 | |
| TestisLeydigCell | 6.55 | |
| TestisSeminiferousTubule | 5.05 | |
| Thalamus | 6.4 | |
| Thymus | 4.5 | |
| Thyroid | 7.05 | |
| Tongue | 6.1 | |
| Tonsil | 5.75 | |
| Trachea | 5.6 | |
| TrigeminalGanglion | 6.8 | |
| Uterus | 4.6 | |
| UterusCorpus | 5.7 | |
| WholeBlood | 6.35 | |
| Wholebrain | 4.6 | |
| colon | 5.75 | |
| pineal_day | 7.26 | |
| pineal_night | 7 | |
| retina | 7.775 | |
| small_intestine | 5.5 | |
- Probe name: CUST_1841_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.45 ± 0.59 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.39 ± 0.42 | |
| Basal Part of Pons | 4.53 ± 0.54 | |
| Cerebellar Cortex | 4.79 ± 0.24 | |
| Cerebellar Nuclei | 4.3 ± 0.5 | |
| Claustrum | 3.93 ± 0.64 | |
| Epithalamus | 5.16 ± 0.42 | |
| Frontal Lobe | 4.51 ± 0.42 | |
| Globus Pallidus | 4.26 ± 0.64 | |
| Hypothalamus | 4.94 ± 0.29 | |
| Insula | 4.4 ± 0.38 | |
| Limbic Lobe | 4.31 ± 0.44 | |
| Mesencephalon | 4.42 ± 0.41 | |
| Myelencephalon | 4.47 ± 0.52 | |
| Occipital Lobe | 4.5 ± 0.36 | |
| Parietal Lobe | 4.51 ± 0.48 | |
| Pontine Tegmentum | 4.45 ± 0.51 | |
| Striatum | 4.25 ± 0.46 | |
| Subthalamus | 3.99 ± 0.51 | |
| Temporal Lobe | 4.39 ± 0.46 | |
| Thalamus | 4.51 ± 0.37 | |
| White Matter | 5.18 ± 0.38 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Slc25a17 | CB | Cerebellum | 32.83 | |
| 45.52 | | |||
| Slc25a17 | CTX | Cerebral cortex | 59.12 | |
| 44.37 | | |||
| Slc25a17 | HIP | Hippocampal region | 40.83 | |
| 52.22 | | |||
| Slc25a17 | HPF | Hippocampal formation | 40.56 | |
| 43.94 | | |||
| Slc25a17 | HY | Hypothalamus | 49.77 | |
| 40.13 | | |||
| Slc25a17 | LSX | Lateral septal complex | 55.71 | |
| 43.8 | | |||
| Slc25a17 | MB | Midbrain | 51.02 | |
| 47.21 | | |||
| Slc25a17 | MY | Medulla | 58.23 | |
| 67.05 | | |||
| Slc25a17 | OLF | Olfactory bulb | 61.14 | |
| 52.71 | | |||
| Slc25a17 | P | Pons | 51.95 | |
| 57.42 | | |||
| Slc25a17 | PAL | Pallidum | 45.57 | |
| 41.61 | | |||
| Slc25a17 | RHP | Retrohippocampal region | 40.7 | |
| 32.37 | | |||
| Slc25a17 | sAMY | Striatum-like amygdalar nuclei | 33.25 | |
| 26.37 | | |||
| Slc25a17 | STR | Striatum | 39.98 | |
| 29.03 | | |||
| Slc25a17 | STRd | Striatum dorsal region | 35.42 | |
| 25.2 | | |||
| Slc25a17 | STRv | Striatum ventral region | 49.23 | |
| 33.32 | | |||
| Slc25a17 | TH | Thalamus | 58.37 | |
| 52.97 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00041919 | 9 | 249 | 257 | NILYLLHQR | Peptide Atlas |