Annotation Detail for SEC23A
Basic Information Top
| Gene Symbol: | SEC23A ( CLSD,MGC26267 ) |
|---|---|
| Gene Full Name: | Sec23 homolog A (S. cerevisiae) |
| Band: | 14q21.1 |
| Quick Links | Entrez ID:10484; OMIM: 610511; Uniprot ID:SC23A_HUMAN; ENSEMBL ID: ENSG00000100934; HGNC ID: 10701 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.272927
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 13 / 70761 | 183 |  |
| blastocyst | 6 / 62319 | 96 | |
| fetus | 47 / 564012 | 83 | |
| neonate | 8 / 31097 | 257 |  |
| infant | 0 / 23620 | 0 | |
| juvenile | 24 / 55556 | 431 | |
| adult | 114 / 1939121 | 58 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 2 / 12794 | 156 | |
| bladder carcinoma | 3 / 17475 | 171 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 |  |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 7 / 82823 | 84 | |
| colorectal tumor | 9 / 114246 | 78 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 6 / 119369 | 50 | |
| germ cell tumor | 28 / 263845 | 106 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 27 / 136302 | 198 | |
| kidney tumor | 7 / 68959 | 101 | |
| leukemia | 5 / 95842 | 52 | |
| liver tumor | 26 / 96359 | 269 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 11 / 97250 | 113 | |
| normal | 345 / 3360307 | 102 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 4 / 104616 | 38 | |
| primitive neuroectodermal tumor of the CNS | 5 / 125680 | 39 | |
| prostate cancer | 6 / 102680 | 58 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 9 / 125191 | 71 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 3 / 13106 | 228 | |
| adrenal gland | 5 / 33197 | 150 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 3 / 29757 | 100 | |
| blood | 1 / 123478 | 8 | |
| bone | 10 / 71655 | 139 | |
| bone marrow | 7 / 48801 | 143 | |
| brain | 167 / 1100989 | 151 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 16 / 149255 | 107 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 22 / 215722 | 101 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 11 / 211054 | 52 | |
| heart | 4 / 89626 | 44 | |
| intestine | 13 / 234472 | 55 | |
| kidney | 18 / 211777 | 84 | |
| larynx | 1 / 24145 | 41 | |
| liver | 29 / 207743 | 139 | |
| lung | 12 / 336974 | 35 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 9 / 153271 | 58 | |
| mouth | 28 / 67052 | 417 | |
| muscle | 6 / 107715 | 55 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 7 / 102051 | 68 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 14 / 280825 | 49 | |
| prostate | 12 / 189345 | 63 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 15 / 210574 | 71 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 4 / 96619 | 41 | |
| testis | 54 / 330442 | 163 | |
| thymus | 15 / 81131 | 184 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 25 / 52413 | 476 | |
| umbilical cord | 2 / 13680 | 146 | |
| uterus | 42 / 232878 | 180 | |
| vascular | 21 / 51780 | 405 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 204344_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 16.25 | |
| Adipocyte | 31.75 | |
| AdrenalCortex | 5.4 | |
| Adrenalgland | 4.95 | |
| Amygdala | 6 | |
| Appendix | 5.4 | |
| AtrioventricularNode | 4.7 | |
| BDCA4+_DentriticCells | 21.35 | |
| Bonemarrow | 5.15 | |
| BronchialEpithelialCells | 22 | |
| CD105+_Endothelial | 6.25 | |
| CD14+_Monocytes | 5.95 | |
| CD19+_BCells(neg._sel.) | 5.85 | |
| CD33+_Myeloid | 11.65 | |
| CD34+ | 7 | |
| CD4+_Tcells | 10.55 | |
| CD56+_NKCells | 6.75 | |
| CD71+_EarlyErythroid | 5 | |
| CD8+_Tcells | 7.75 | |
| CardiacMyocytes | 49.55 | |
| Caudatenucleus | 4.9 | |
| Cerebellum | 4.45 | |
| CerebellumPeduncles | 6.4 | |
| CiliaryGanglion | 4.55 | |
| CingulateCortex | 5.5 | |
| Colorectaladenocarcinoma | 5.55 | |
| DorsalRootGanglion | 4.3 | |
| FetalThyroid | 5.4 | |
| Fetalbrain | 5.35 | |
| Fetalliver | 7.45 | |
| Fetallung | 4.1 | |
| GlobusPallidus | 4 | |
| Heart | 7.9 | |
| Hypothalamus | 6.7 | |
| Kidney | 4.55 | |
| Leukemia_chronicMyelogenousK-562 | 4.7 | |
| Leukemia_promyelocytic-HL-60 | 4.95 | |
| Leukemialymphoblastic(MOLT-4) | 4.75 | |
| Liver | 8.5 | |
| Lung | 6.75 | |
| Lymphnode | 3.9 | |
| Lymphoma_burkitts(Daudi) | 7.15 | |
| Lymphoma_burkitts(Raji) | 8.05 | |
| MedullaOblongata | 4.65 | |
| OccipitalLobe | 5.5 | |
| OlfactoryBulb | 4.2 | |
| Ovary | 3.8 | |
| Pancreas | 4.4 | |
| PancreaticIslet | 6 | |
| ParietalLobe | 5.85 | |
| Pituitary | 6.3 | |
| Placenta | 6.4 | |
| Pons | 5.35 | |
| PrefrontalCortex | 7.3 | |
| Prostate | 6.1 | |
| Salivarygland | 4.55 | |
| SkeletalMuscle | 6.85 | |
| Skin | 4.25 | |
| SmoothMuscle | 161.05 | |
| Spinalcord | 5.75 | |
| SubthalamicNucleus | 5.1 | |
| SuperiorCervicalGanglion | 6.65 | |
| TemporalLobe | 5.25 | |
| Testis | 5.1 | |
| TestisGermCell | 5.6 | |
| TestisIntersitial | 5.3 | |
| TestisLeydigCell | 7.2 | |
| TestisSeminiferousTubule | 4.7 | |
| Thalamus | 6.5 | |
| Thymus | 4.05 | |
| Thyroid | 6.8 | |
| Tongue | 5.3 | |
| Tonsil | 5.3 | |
| Trachea | 4.45 | |
| TrigeminalGanglion | 5.35 | |
| Uterus | 5.25 | |
| UterusCorpus | 4.9 | |
| WholeBlood | 7.3 | |
| Wholebrain | 4.6 | |
| colon | 7.8 | |
| pineal_day | 12.86 | |
| pineal_night | 21.84 | |
| retina | 21.6 | |
| small_intestine | 23 | |
- Probe name: A_23_P348894
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.21 ± 0.48 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.56 ± 0.14 | |
| Basal Part of Pons | 7.83 ± 0.24 | |
| Cerebellar Cortex | 7.37 ± 0.27 | |
| Cerebellar Nuclei | 7.84 ± 0.42 | |
| Claustrum | 7.79 ± 0.47 | |
| Epithalamus | 7.34 ± 0.48 | |
| Frontal Lobe | 7.62 ± 0.4 | |
| Globus Pallidus | 7.17 ± 0.25 | |
| Hypothalamus | 7.92 ± 0.21 | |
| Insula | 7.44 ± 0.31 | |
| Limbic Lobe | 7.7 ± 0.35 | |
| Mesencephalon | 7.64 ± 0.52 | |
| Myelencephalon | 7.59 ± 0.42 | |
| Occipital Lobe | 7.86 ± 0.31 | |
| Parietal Lobe | 7.75 ± 0.33 | |
| Pontine Tegmentum | 7.59 ± 0.39 | |
| Striatum | 8.03 ± 0.3 | |
| Subthalamus | 8.26 ± 0.29 | |
| Temporal Lobe | 7.53 ± 0.32 | |
| Thalamus | 7.63 ± 0.29 | |
| White Matter | 6.34 ± 0.59 | |
Mouse Brain ISH 
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00000783 | 12 | 68 | 79 | AVLNPLCQVDYR | Peptide Atlas |
| SC23A_HUMAN_2 | 13 | 2 | 14 | TTYLEFIQQNEER | PRIDE |
| SC23A_HUMAN_235 | 23 | 235 | 257 | IDMNLTDLLGELQRDPWPVPQGK | PRIDE |
| SC23A_HUMAN_236 | 14 | 236 | 249 | IDMNLTDLLGELQR | PRIDE |
| SC23A_HUMAN_286 | 22 | 286 | 307 | IMMFIGGPATQGPGMVVGDELK | PRIDE |
| SC23A_HUMAN_33 | 13 | 33 | 45 | MVVPVAALFTPLK | PRIDE |
| SC23A_HUMAN_34 | 13 | 34 | 46 | MVVPVAALFTPLK | PRIDE |
| SC23A_HUMAN_67 | 12 | 67 | 78 | AVLNPLCQVDYR | PRIDE |
| SC23A_HUMAN_682 | 17 | 682 | 698 | HLLQAPVDDAQEILHSR | PRIDE |
| SC23A_HUMAN_682 | 22 | 682 | 703 | HLLQAPVDDAQEILHSRFPMPR | PRIDE |