AutismKB 2.0

Annotation Detail for C1orf61


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Basic Information Top
Gene Symbol:C1orf61 ( CROC4,FLJ38303 )
Gene Full Name: chromosome 1 open reading frame 61
Band: 1q22
Quick LinksEntrez ID:10485; OMIM: NA; Uniprot ID:CROC4_HUMAN; ENSEMBL ID: ENSG00000125462; HGNC ID: 30780
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus45 / 56401279
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult90 / 193912146
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor26 / 26384598
glioma46 / 106883430
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia1 / 9584210
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal180 / 336030753
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood1 / 1234788
bone0 / 716550 
bone marrow0 / 488010 
brain211 / 1100989191
cervix0 / 481710 
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye23 / 211054108
heart0 / 896260 
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung4 / 33697411
lymph0 / 442700 
lymph node2 / 9161021
mammary gland0 / 1532710 
mouth0 / 670520 
muscle2 / 10771518
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta1 / 2808253
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis11 / 33044233
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205103_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.4
Adipocyte7.4
AdrenalCortex8.75
Adrenalgland5.75
Amygdala228.7
Appendix8.35
AtrioventricularNode11.35
BDCA4+_DentriticCells6.65
Bonemarrow7.65
BronchialEpithelialCells6.4
CD105+_Endothelial7.1
CD14+_Monocytes7.05
CD19+_BCells(neg._sel.)6.75
CD33+_Myeloid8.4
CD34+7.8
CD4+_Tcells6.9
CD56+_NKCells7.55
CD71+_EarlyErythroid6
CD8+_Tcells6.4
CardiacMyocytes9.3
Caudatenucleus425.8
Cerebellum229.05
CerebellumPeduncles261.8
CiliaryGanglion10.05
CingulateCortex226.8
Colorectaladenocarcinoma6.3
DorsalRootGanglion7
FetalThyroid6.1
Fetalbrain292.3
Fetalliver5.8
Fetallung5.1
GlobusPallidus129.3
Heart9.7
Hypothalamus394.6
Kidney6.25
Leukemia_chronicMyelogenousK-5629.05
Leukemia_promyelocytic-HL-607.45
Leukemialymphoblastic(MOLT-4)4.8
Liver10.15
Lung7.85
Lymphnode7.15
Lymphoma_burkitts(Daudi)8.8
Lymphoma_burkitts(Raji)11.55
MedullaOblongata226.2
OccipitalLobe257.9
OlfactoryBulb24.5
Ovary4.95
Pancreas6.5
PancreaticIslet7
ParietalLobe202.55
Pituitary8.6
Placenta6.2
Pons170.05
PrefrontalCortex252.25
Prostate7.1
Salivarygland6.65
SkeletalMuscle8.25
Skin11.5
SmoothMuscle7.3
Spinalcord359.35
SubthalamicNucleus138.4
SuperiorCervicalGanglion32.6
TemporalLobe343.55
Testis25.8
TestisGermCell12.75
TestisIntersitial18.85
TestisLeydigCell23.3
TestisSeminiferousTubule12.35
Thalamus327.4
Thymus4.9
Thyroid7.25
Tongue8.15
Tonsil6.25
Trachea5.95
TrigeminalGanglion8.55
Uterus6.9
UterusCorpus7
WholeBlood7
Wholebrain275.5
colon6.5
pineal_day42.24
pineal_night34.1
retina100.2
small_intestine6.3
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_59_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.13 ± 0.25
Basal Forebrain7.4 ± 0.15
Basal Part of Pons6.07 ± 0.28
Cerebellar Cortex6.9 ± 0.24
Cerebellar Nuclei6.42 ± 0.59
Claustrum6.51 ± 0.46
Epithalamus6.43 ± 0.71
Frontal Lobe6.76 ± 0.41
Globus Pallidus8.02 ± 0.42
Hypothalamus7.04 ± 0.35
Insula6.86 ± 0.4
Limbic Lobe6.81 ± 0.39
Mesencephalon7.08 ± 0.49
Myelencephalon6.93 ± 0.53
Occipital Lobe7.12 ± 0.5
Parietal Lobe6.8 ± 0.38
Pontine Tegmentum7.09 ± 0.31
Striatum7.48 ± 0.52
Subthalamus6.27 ± 0.75
Temporal Lobe6.8 ± 0.32
Thalamus7.16 ± 0.34
White Matter5.56 ± 0.61
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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