AutismKB 2.0

Annotation Detail for SYNCRIP


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:SYNCRIP ( FLJ31626,GRY-RBP,GRYRBP,HNRPQ1,NSAP1,PP68,dJ3J17.2,hnRNP-Q )
Gene Full Name: synaptotagmin binding, cytoplasmic RNA interacting protein
Band: 6q14.3
Quick LinksEntrez ID:10492; OMIM: NA; Uniprot ID:HNRPQ_HUMAN; ENSEMBL ID: ENSG00000135316; HGNC ID: 16918
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body11 / 70761155
blastocyst11 / 62319176
fetus65 / 564012115
neonate4 / 31097128
infant6 / 23620254
juvenile6 / 55556107
adult225 / 1939121116
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor3 / 12794234
bladder carcinoma6 / 17475343
breast (mammary gland) tumor8 / 9417884
cervical tumor2 / 3436658
chondrosarcoma18 / 82823217
colorectal tumor13 / 114246113
esophageal tumor1 / 1729057
gastrointestinal tumor15 / 119369125
germ cell tumor43 / 263845162
glioma5 / 10688346
head and neck tumor8 / 13630258
kidney tumor7 / 68959101
leukemia11 / 95842114
liver tumor15 / 96359155
lung tumor6 / 10312758
lymphoma13 / 71755181
non-neoplasia3 / 9725030
normal336 / 336030799
ovarian tumor14 / 76682182
pancreatic tumor16 / 104616152
primitive neuroectodermal tumor of the CNS16 / 125680127
prostate cancer14 / 102680136
retinoblastoma8 / 46356172
skin tumor19 / 124949152
soft tissue/muscle tissue tumor16 / 125191127
uterine tumor15 / 90257166
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue3 / 13106228
adrenal gland3 / 3319790
ascites5 / 40015124
bladder10 / 29757336
blood10 / 12347880
bone17 / 71655237
bone marrow6 / 48801122
brain63 / 110098957
cervix2 / 4817141
connective tissue13 / 14925587
ear1 / 1621261
embryonic tissue34 / 215722157
esophagus1 / 2020949
eye23 / 211054108
heart5 / 8962655
intestine29 / 234472123
kidney22 / 211777103
larynx1 / 2414541
liver24 / 207743115
lung39 / 336974115
lymph7 / 44270158
lymph node18 / 91610196
mammary gland32 / 153271208
mouth8 / 67052119
muscle8 / 10771574
nerve3 / 15768190
ovary16 / 102051156
pancreas25 / 214812116
parathyroid2 / 2053997
pharynx5 / 41328120
pituitary gland2 / 16585120
placenta31 / 280825110
prostate26 / 189345137
salivary gland1 / 2015549
skin24 / 210574113
spleen1 / 5395218
stomach7 / 9661972
testis20 / 33044260
thymus6 / 8113173
thyroid5 / 47473105
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus48 / 232878206
vascular4 / 5178077
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 209024_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts488.85
Adipocyte28.15
AdrenalCortex13
Adrenalgland6.85
Amygdala12.1
Appendix5.8
AtrioventricularNode8
BDCA4+_DentriticCells222.5
Bonemarrow9.75
BronchialEpithelialCells100.8
CD105+_Endothelial164.7
CD14+_Monocytes58.05
CD19+_BCells(neg._sel.)128.55
CD33+_Myeloid194
CD34+314.9
CD4+_Tcells139.95
CD56+_NKCells182.75
CD71+_EarlyErythroid48.4
CD8+_Tcells112.45
CardiacMyocytes42.25
Caudatenucleus5.85
Cerebellum6.45
CerebellumPeduncles13.15
CiliaryGanglion8.2
CingulateCortex10.8
Colorectaladenocarcinoma117.9
DorsalRootGanglion8.65
FetalThyroid11.6
Fetalbrain10.45
Fetalliver17.6
Fetallung11.4
GlobusPallidus4.8
Heart8.25
Hypothalamus15.05
Kidney7.35
Leukemia_chronicMyelogenousK-56213
Leukemia_promyelocytic-HL-6045
Leukemialymphoblastic(MOLT-4)29.3
Liver10.15
Lung16.4
Lymphnode8.5
Lymphoma_burkitts(Daudi)17.85
Lymphoma_burkitts(Raji)13.75
MedullaOblongata7.95
OccipitalLobe10.9
OlfactoryBulb11.1
Ovary8
Pancreas21.2
PancreaticIslet15.1
ParietalLobe7.9
Pituitary12.05
Placenta36.2
Pons10.75
PrefrontalCortex11.7
Prostate39.75
Salivarygland4.75
SkeletalMuscle9.9
Skin8.55
SmoothMuscle58.3
Spinalcord9.95
SubthalamicNucleus5.95
SuperiorCervicalGanglion14.6
TemporalLobe10.25
Testis10.5
TestisGermCell10.3
TestisIntersitial11.35
TestisLeydigCell10.85
TestisSeminiferousTubule8.9
Thalamus6.15
Thymus50.5
Thyroid40.55
Tongue27.3
Tonsil32.15
Trachea15.45
TrigeminalGanglion6.5
Uterus22.6
UterusCorpus12.3
WholeBlood12
Wholebrain11.5
colon71.8
pineal_day32.54
pineal_night43.4
retina12.475
small_intestine62.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P791515
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.84 ± 0.19
Basal Forebrain10.14 ± 0.18
Basal Part of Pons9.83 ± 0.12
Cerebellar Cortex10.04 ± 0.14
Cerebellar Nuclei9.93 ± 0.25
Claustrum9.93 ± 0.18
Epithalamus10.17 ± 0.1
Frontal Lobe9.91 ± 0.21
Globus Pallidus10.44 ± 0.19
Hypothalamus10.02 ± 0.22
Insula9.79 ± 0.24
Limbic Lobe9.87 ± 0.21
Mesencephalon9.92 ± 0.23
Myelencephalon9.91 ± 0.21
Occipital Lobe9.87 ± 0.2
Parietal Lobe9.99 ± 0.18
Pontine Tegmentum9.99 ± 0.2
Striatum9.9 ± 0.19
Subthalamus9.94 ± 0.14
Temporal Lobe9.91 ± 0.18
Thalamus9.94 ± 0.16
White Matter10.51 ± 0.12
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
SyncripCBCerebellum15.42
9.96
SyncripCTXCerebral cortex8.18
4.93
SyncripHIPHippocampal region48.84
29.69
SyncripHPFHippocampal formation40.27
23.41
SyncripHYHypothalamus2.88
1.71
SyncripLSXLateral septal complex3.99
2.45
SyncripMBMidbrain4.28
3.14
SyncripMYMedulla13.62
12.31
SyncripOLFOlfactory bulb30.77
17.17
SyncripPPons11.55
10.58
SyncripPALPallidum3.33
2.7
SyncripRHPRetrohippocampal region22.44
13.09
SyncripsAMYStriatum-like amygdalar nuclei11.41
5.57
SyncripSTRStriatum5.54
3.24
SyncripSTRdStriatum dorsal region2.9
2
SyncripSTRvStriatum ventral region11.56
5.79
SyncripTHThalamus3.58
2.13
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
HNRPQ_HUMAN_0 0 0 0 AIEALKEFNEDGALAVLQQFK PRIDE
HNRPQ_HUMAN_0 0 0 0 DLFEDELVPLFEK PRIDE
HNRPQ_HUMAN_0 0 0 0 HIGVCISVANNR PRIDE
HNRPQ_HUMAN_0 0 0 0 VAEKLDEIYVAGLVAHSDLDER PRIDE
HNRPQ_HUMAN_121 10 121 130 EAKIKALLER PRIDE
HNRPQ_HUMAN_130 12 130 141 TGYTLDVTTGQR PRIDE
HNRPQ_HUMAN_171 13 171 183 DLFEDELVPLFEK PRIDE
HNRPQ_HUMAN_172 13 172 184 DLFEDELVPLFEK PRIDE
HNRPQ_HUMAN_192 11 192 202 LMMDPLTGLNR PRIDE
HNRPQ_HUMAN_232 12 232 243 HIGVCISVANNR PRIDE
HNRPQ_HUMAN_266 17 266 282 VTEGLTDVILYHQPDDK PRIDE
HNRPQ_HUMAN_343 13 343 355 NLANTVTEEILEK PRIDE
HNRPQ_HUMAN_60 21 60 80 AIEALKEFNEDGALAVLQQFK PRIDE
PAp00002786 11 287 297 GFCFLEYEDHK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved