AutismKB 2.0

Annotation Detail for UBD


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Basic Information Top
Gene Symbol:UBD ( FAT10,GABBR1,UBD-3 )
Gene Full Name: ubiquitin D
Band: 6p22.1
Quick LinksEntrez ID:10537; OMIM: 606050; Uniprot ID:UBD_HUMAN; ENSEMBL ID: ENSG00000213886; HGNC ID: 18795
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus7 / 56401212
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult22 / 193912111
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor5 / 11936941
germ cell tumor3 / 26384511
glioma0 / 1068830 
head and neck tumor2 / 13630214
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor9 / 9635993
lung tumor1 / 1031279
lymphoma2 / 7175527
non-neoplasia0 / 972500 
normal24 / 33603077
ovarian tumor0 / 766820 
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder3 / 29757100
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain3 / 11009892
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine5 / 23447221
kidney3 / 21177714
larynx0 / 241450 
liver11 / 20774352
lung2 / 3369745
lymph0 / 442700 
lymph node2 / 9161021
mammary gland2 / 15327113
mouth1 / 6705214
muscle0 / 1077150 
nerve0 / 157680 
ovary1 / 1020519
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx5 / 41328120
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach5 / 9661951
testis0 / 3304420 
thymus1 / 8113112
thyroid1 / 4747321
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus3 / 23287812
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205890_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts1159.5
Adipocyte4.75
AdrenalCortex5.3
Adrenalgland4.15
Amygdala4.9
Appendix5.1
AtrioventricularNode4.2
BDCA4+_DentriticCells5
Bonemarrow4.95
BronchialEpithelialCells4.7
CD105+_Endothelial4.9
CD14+_Monocytes5.2
CD19+_BCells(neg._sel.)4.95
CD33+_Myeloid6.05
CD34+6
CD4+_Tcells5.1
CD56+_NKCells5.5
CD71+_EarlyErythroid4.55
CD8+_Tcells4.5
CardiacMyocytes6.3
Caudatenucleus4.35
Cerebellum3.9
CerebellumPeduncles5.55
CiliaryGanglion3.55
CingulateCortex5.05
Colorectaladenocarcinoma4.85
DorsalRootGanglion3.9
FetalThyroid4.7
Fetalbrain4.65
Fetalliver26.65
Fetallung4.15
GlobusPallidus3.7
Heart6.55
Hypothalamus5.1
Kidney4.65
Leukemia_chronicMyelogenousK-5624.35
Leukemia_promyelocytic-HL-604.25
Leukemialymphoblastic(MOLT-4)3.8
Liver6.65
Lung5.4
Lymphnode209.75
Lymphoma_burkitts(Daudi)6.25
Lymphoma_burkitts(Raji)6.95
MedullaOblongata4.4
OccipitalLobe4.3
OlfactoryBulb3.8
Ovary3.35
Pancreas14.1
PancreaticIslet457.4
ParietalLobe5.15
Pituitary5.8
Placenta4.95
Pons4.6
PrefrontalCortex6.05
Prostate6.05
Salivarygland123.6
SkeletalMuscle5.45
Skin3.9
SmoothMuscle5.5
Spinalcord5.1
SubthalamicNucleus4.45
SuperiorCervicalGanglion5.9
TemporalLobe4.4
Testis4.2
TestisGermCell3.95
TestisIntersitial4.05
TestisLeydigCell4.8
TestisSeminiferousTubule4.2
Thalamus4.9
Thymus182.25
Thyroid6.1
Tongue4.95
Tonsil726.05
Trachea11.6
TrigeminalGanglion5.05
Uterus3.85
UterusCorpus4.55
WholeBlood5.35
Wholebrain3.9
colon4.8
pineal_day5.88
pineal_night5.78
retina5.875
small_intestine4.65
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_14214_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.24 ± 1
Basal Forebrain1.75 ± 0.21
Basal Part of Pons1.48 ± 0.35
Cerebellar Cortex1.51 ± 0.54
Cerebellar Nuclei2.01 ± 0.66
Claustrum2.65 ± 0.79
Epithalamus1.56 ± 0.8
Frontal Lobe1.67 ± 0.8
Globus Pallidus2.31 ± 0.44
Hypothalamus1.84 ± 0.76
Insula1.74 ± 0.38
Limbic Lobe1.8 ± 0.67
Mesencephalon1.93 ± 0.71
Myelencephalon1.83 ± 0.67
Occipital Lobe1.87 ± 0.59
Parietal Lobe1.74 ± 0.69
Pontine Tegmentum1.88 ± 0.7
Striatum1.96 ± 0.62
Subthalamus1.93 ± 0.7
Temporal Lobe1.71 ± 0.6
Thalamus1.8 ± 0.6
White Matter2.16 ± 0.46
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
UbdCBCerebellum4.19
4.78
UbdCTXCerebral cortex1.39
0.83
UbdHIPHippocampal region0.81
0.65
UbdHPFHippocampal formation1.41
0.68
UbdHYHypothalamus1.03
0.5
UbdLSXLateral septal complex0.21
0.28
UbdMBMidbrain1.1
0.71
UbdMYMedulla7.27
6.79
UbdOLFOlfactory bulb7.15
5.79
UbdPPons3.9
2.01
UbdPALPallidum0.58
0.31
UbdRHPRetrohippocampal region2.43
0.72
UbdsAMYStriatum-like amygdalar nuclei1.49
0.44
UbdSTRStriatum0.51
0.33
UbdSTRdStriatum dorsal region0.3
0.24
UbdSTRvStriatum ventral region0.87
0.35
UbdTHThalamus0.46
0.41
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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