AutismKB 2.0

Annotation Detail for BATF


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:BATF ( B-ATF,BATF1,SFA-2,SFA2 )
Gene Full Name: basic leucine zipper transcription factor, ATF-like
Band: 14q24.3
Quick LinksEntrez ID:10538; OMIM: 612476; Uniprot ID:BATF_HUMAN; ENSEMBL ID: ENSG00000156127; HGNC ID: 958
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus4 / 5640127
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult14 / 19391217
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor3 / 26384511
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia1 / 9584210
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma1 / 7175513
non-neoplasia1 / 9725010
normal23 / 33603076
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor4 / 12494932
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood4 / 12347832
bone0 / 716550 
bone marrow0 / 488010 
brain0 / 11009890 
cervix0 / 481710 
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine1 / 2344724
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung8 / 33697423
lymph1 / 4427022
lymph node3 / 9161032
mammary gland2 / 15327113
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate1 / 1893455
salivary gland0 / 201550 
skin4 / 21057418
spleen0 / 539520 
stomach2 / 9661920
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil2 / 16999117
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205965_at
Cell line Expression level Expression bar
721_B_lymphoblasts70.05
Adipocyte5.65
AdrenalCortex6
Adrenalgland4.85
Amygdala6.15
Appendix7.85
AtrioventricularNode4.85
BDCA4+_DentriticCells7.5
Bonemarrow7.2
BronchialEpithelialCells5.55
CD105+_Endothelial5.9
CD14+_Monocytes11.05
CD19+_BCells(neg._sel.)9.95
CD33+_Myeloid22.45
CD34+12.2
CD4+_Tcells51.25
CD56+_NKCells70.15
CD71+_EarlyErythroid6.9
CD8+_Tcells34.4
CardiacMyocytes7.2
Caudatenucleus5.6
Cerebellum4.65
CerebellumPeduncles6.95
CiliaryGanglion4.2
CingulateCortex6
Colorectaladenocarcinoma5.85
DorsalRootGanglion4.5
FetalThyroid5.65
Fetalbrain5.85
Fetalliver4.95
Fetallung4.9
GlobusPallidus4.25
Heart7.35
Hypothalamus6.25
Kidney4.7
Leukemia_chronicMyelogenousK-5625.85
Leukemia_promyelocytic-HL-605.1
Leukemialymphoblastic(MOLT-4)5.45
Liver7.85
Lung10.2
Lymphnode7.45
Lymphoma_burkitts(Daudi)7.4
Lymphoma_burkitts(Raji)12.25
MedullaOblongata5.3
OccipitalLobe5.2
OlfactoryBulb4.45
Ovary4.05
Pancreas4.6
PancreaticIslet6.4
ParietalLobe6.1
Pituitary6.8
Placenta5.25
Pons5.6
PrefrontalCortex6.95
Prostate6.9
Salivarygland4.7
SkeletalMuscle6.8
Skin4.65
SmoothMuscle6.65
Spinalcord6.3
SubthalamicNucleus5.25
SuperiorCervicalGanglion6.5
TemporalLobe5.3
Testis4.95
TestisGermCell4.75
TestisIntersitial6
TestisLeydigCell6.15
TestisSeminiferousTubule5.05
Thalamus5.9
Thymus4.5
Thyroid7.1
Tongue5.8
Tonsil7.65
Trachea4.85
TrigeminalGanglion6
Uterus4.7
UterusCorpus5.1
WholeBlood10.2
Wholebrain4.75
colon5.85
pineal_day6.52
pineal_night6.44
retina7.1
small_intestine5.6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P128974
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.25 ± 1.26
Basal Forebrain3.12 ± 0.78
Basal Part of Pons3.38 ± 1.18
Cerebellar Cortex2.28 ± 0.46
Cerebellar Nuclei3.55 ± 0.6
Claustrum3.28 ± 1.07
Epithalamus3.29 ± 1.22
Frontal Lobe3 ± 1.16
Globus Pallidus4.3 ± 0.85
Hypothalamus2.92 ± 0.73
Insula3.48 ± 0.79
Limbic Lobe2.73 ± 1.09
Mesencephalon3.35 ± 0.98
Myelencephalon3.3 ± 0.96
Occipital Lobe2.57 ± 0.95
Parietal Lobe3.21 ± 1.11
Pontine Tegmentum3.4 ± 1.42
Striatum6.47 ± 1.13
Subthalamus3.14 ± 0.8
Temporal Lobe3.49 ± 0.77
Thalamus3.19 ± 0.86
White Matter2.92 ± 0.62
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
BatfCBCerebellum15.44
15.97
BatfCTXCerebral cortex15.3
12.88
BatfHIPHippocampal region9.69
11.35
BatfHPFHippocampal formation8.33
8.72
BatfHYHypothalamus2.6
2.3
BatfLSXLateral septal complex0.94
0.67
BatfMBMidbrain3.17
3.2
BatfMYMedulla11.01
12.95
BatfOLFOlfactory bulb29.74
27.53
BatfPPons5.34
5.93
BatfPALPallidum2.57
2.39
BatfRHPRetrohippocampal region6.2
5.13
BatfsAMYStriatum-like amygdalar nuclei3.44
2.55
BatfSTRStriatum4.8
3.84
BatfSTRdStriatum dorsal region5.59
4.56
BatfSTRvStriatum ventral region4.57
3.46
BatfTHThalamus4.25
3.93
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved