AutismKB 2.0

Annotation Detail for TM9SF1


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Basic Information Top
Gene Symbol:TM9SF1 ( HMP70,MP70 )
Gene Full Name: transmembrane 9 superfamily member 1
Band: 14q12
Quick LinksEntrez ID:10548; OMIM: NA; Uniprot ID:TM9S1_HUMAN; ENSEMBL ID: ENSG00000100926; HGNC ID: 11864
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body7 / 7076198
blastocyst2 / 6231932
fetus31 / 56401254
neonate3 / 3109796
infant4 / 23620169
juvenile4 / 5555671
adult154 / 193912179
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor5 / 9417853
cervical tumor0 / 343660 
chondrosarcoma7 / 8282384
colorectal tumor6 / 11424652
esophageal tumor1 / 1729057
gastrointestinal tumor9 / 11936975
germ cell tumor8 / 26384530
glioma11 / 106883102
head and neck tumor8 / 13630258
kidney tumor7 / 68959101
leukemia8 / 9584283
liver tumor7 / 9635972
lung tumor5 / 10312748
lymphoma0 / 717550 
non-neoplasia7 / 9725071
normal244 / 336030772
ovarian tumor3 / 7668239
pancreatic tumor7 / 10461666
primitive neuroectodermal tumor of the CNS23 / 125680183
prostate cancer14 / 102680136
retinoblastoma0 / 463560 
skin tumor4 / 12494932
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor12 / 90257132
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland3 / 3319790
ascites4 / 4001599
bladder4 / 29757134
blood8 / 12347864
bone6 / 7165583
bone marrow0 / 488010 
brain65 / 110098959
cervix8 / 48171166
connective tissue11 / 14925573
ear0 / 162120 
embryonic tissue13 / 21572260
esophagus1 / 2020949
eye14 / 21105466
heart2 / 8962622
intestine29 / 234472123
kidney22 / 211777103
larynx0 / 241450 
liver14 / 20774367
lung19 / 33697456
lymph0 / 442700 
lymph node2 / 9161021
mammary gland14 / 15327191
mouth5 / 6705274
muscle1 / 1077159
nerve0 / 157680 
ovary4 / 10205139
pancreas11 / 21481251
parathyroid2 / 2053997
pharynx2 / 4132848
pituitary gland1 / 1658560
placenta49 / 280825174
prostate26 / 189345137
salivary gland1 / 2015549
skin14 / 21057466
spleen1 / 5395218
stomach3 / 9661931
testis15 / 33044245
thymus1 / 8113112
thyroid3 / 4747363
tonsil2 / 16999117
trachea1 / 5241319
umbilical cord0 / 136800 
uterus17 / 23287872
vascular7 / 51780135
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 209150_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts52.2
Adipocyte31.2
AdrenalCortex22.45
Adrenalgland44.55
Amygdala19.75
Appendix22.35
AtrioventricularNode13.95
BDCA4+_DentriticCells138.6
Bonemarrow18.45
BronchialEpithelialCells29.85
CD105+_Endothelial28.6
CD14+_Monocytes92.95
CD19+_BCells(neg._sel.)29.9
CD33+_Myeloid117
CD34+77.2
CD4+_Tcells23.55
CD56+_NKCells89.5
CD71+_EarlyErythroid24.4
CD8+_Tcells22.1
CardiacMyocytes18.5
Caudatenucleus11.85
Cerebellum17.45
CerebellumPeduncles21.75
CiliaryGanglion14
CingulateCortex18.1
Colorectaladenocarcinoma37
DorsalRootGanglion16.25
FetalThyroid64.3
Fetalbrain17.95
Fetalliver17.95
Fetallung41.7
GlobusPallidus13.1
Heart24.65
Hypothalamus22.7
Kidney43.8
Leukemia_chronicMyelogenousK-56219.35
Leukemia_promyelocytic-HL-6015.9
Leukemialymphoblastic(MOLT-4)14.75
Liver112.1
Lung153.8
Lymphnode18.05
Lymphoma_burkitts(Daudi)22.7
Lymphoma_burkitts(Raji)25.45
MedullaOblongata14.55
OccipitalLobe15.85
OlfactoryBulb23.65
Ovary14.7
Pancreas39.75
PancreaticIslet70
ParietalLobe16.6
Pituitary29.6
Placenta114.35
Pons16.45
PrefrontalCortex25.45
Prostate84.7
Salivarygland18
SkeletalMuscle18.15
Skin16.65
SmoothMuscle57.45
Spinalcord24.2
SubthalamicNucleus15.2
SuperiorCervicalGanglion18.2
TemporalLobe12.7
Testis17.9
TestisGermCell22.25
TestisIntersitial14.75
TestisLeydigCell14.2
TestisSeminiferousTubule16.45
Thalamus22.3
Thymus18.85
Thyroid185.25
Tongue17.65
Tonsil15.1
Trachea76.25
TrigeminalGanglion15
Uterus25.7
UterusCorpus19.1
WholeBlood37.75
Wholebrain18
colon22.5
pineal_day40.72
pineal_night41.6
retina78.15
small_intestine65.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P151586
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.72 ± 0.53
Basal Forebrain6.04 ± 0.38
Basal Part of Pons6.21 ± 0.32
Cerebellar Cortex6.36 ± 0.36
Cerebellar Nuclei6 ± 0.47
Claustrum5.5 ± 0.92
Epithalamus7.08 ± 0.61
Frontal Lobe6.18 ± 0.47
Globus Pallidus6.03 ± 0.35
Hypothalamus6.33 ± 0.37
Insula6.08 ± 0.38
Limbic Lobe5.89 ± 0.46
Mesencephalon6.17 ± 0.43
Myelencephalon6.15 ± 0.52
Occipital Lobe6.03 ± 0.48
Parietal Lobe6.04 ± 0.52
Pontine Tegmentum6.01 ± 0.55
Striatum6.11 ± 0.49
Subthalamus5.76 ± 0.5
Temporal Lobe6.14 ± 0.45
Thalamus6.26 ± 0.39
White Matter6.08 ± 0.85
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Tm9sf1CBCerebellum3.62
4.75
Tm9sf1CTXCerebral cortex3.51
3.02
Tm9sf1HIPHippocampal region5.01
5.14
Tm9sf1HPFHippocampal formation2.98
2.89
Tm9sf1HYHypothalamus0.07
0.16
Tm9sf1LSXLateral septal complex0
0
Tm9sf1MBMidbrain0.39
1.09
Tm9sf1MYMedulla0.1
0.43
Tm9sf1OLFOlfactory bulb1.67
2.34
Tm9sf1PPons0.05
0.14
Tm9sf1PALPallidum0.08
0.05
Tm9sf1RHPRetrohippocampal region0.36
0.4
Tm9sf1sAMYStriatum-like amygdalar nuclei0.18
0.38
Tm9sf1STRStriatum0.26
0.23
Tm9sf1STRdStriatum dorsal region0.29
0.25
Tm9sf1STRvStriatum ventral region0.23
0.15
Tm9sf1THThalamus1.17
1.52
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00080202 23 49 71 VGPYHNPQETYHYYQLPVCCPEK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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