AutismKB 2.0

Annotation Detail for HTATIP2


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Basic Information Top
Gene Symbol:HTATIP2 ( CC3,FLJ26963,SDR44U1,TIP30 )
Gene Full Name: HIV-1 Tat interactive protein 2, 30kDa
Band: 11p15.1
Quick LinksEntrez ID:10553; OMIM: 605628; Uniprot ID:HTAI2_HUMAN; ENSEMBL ID: ENSG00000109854; HGNC ID: 16637
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus12 / 56401221
neonate2 / 3109764
infant0 / 236200 
juvenile0 / 555560 
adult379 / 1939121195
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor6 / 9417863
cervical tumor0 / 343660 
chondrosarcoma5 / 8282360
colorectal tumor14 / 114246122
esophageal tumor1 / 1729057
gastrointestinal tumor19 / 119369159
germ cell tumor13 / 26384549
glioma1 / 1068839
head and neck tumor4 / 13630229
kidney tumor6 / 6895987
leukemia1 / 9584210
liver tumor1 / 9635910
lung tumor7 / 10312767
lymphoma0 / 717550 
non-neoplasia4 / 9725041
normal98 / 336030729
ovarian tumor0 / 766820 
pancreatic tumor5 / 10461647
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer4 / 10268038
retinoblastoma0 / 463560 
skin tumor9 / 12494972
soft tissue/muscle tissue tumor291 / 1251912324
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland0 / 331970 
ascites2 / 4001549
bladder0 / 297570 
blood0 / 1234780 
bone2 / 7165527
bone marrow1 / 4880120
brain17 / 110098915
cervix0 / 481710 
connective tissue293 / 1492551963
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus1 / 2020949
eye2 / 2110549
heart1 / 8962611
intestine25 / 234472106
kidney11 / 21177751
larynx3 / 24145124
liver10 / 20774348
lung42 / 336974124
lymph0 / 442700 
lymph node3 / 9161032
mammary gland8 / 15327152
mouth1 / 6705214
muscle3 / 10771527
nerve0 / 157680 
ovary2 / 10205119
pancreas10 / 21481246
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta11 / 28082539
prostate8 / 18934542
salivary gland1 / 2015549
skin10 / 21057447
spleen2 / 5395237
stomach17 / 96619175
testis15 / 33044245
thymus0 / 811310 
thyroid1 / 4747321
tonsil2 / 16999117
trachea0 / 524130 
umbilical cord2 / 13680146
uterus4 / 23287817
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 210253_at
Cell line Expression level Expression bar
721_B_lymphoblasts9.7
Adipocyte7.3
AdrenalCortex8.3
Adrenalgland8
Amygdala8
Appendix9.05
AtrioventricularNode7.55
BDCA4+_DentriticCells7.8
Bonemarrow7.6
BronchialEpithelialCells7.05
CD105+_Endothelial8.1
CD14+_Monocytes8.2
CD19+_BCells(neg._sel.)12.4
CD33+_Myeloid9.4
CD34+8.7
CD4+_Tcells8.35
CD56+_NKCells19.55
CD71+_EarlyErythroid7.15
CD8+_Tcells9.45
CardiacMyocytes10.75
Caudatenucleus6.85
Cerebellum6.25
CerebellumPeduncles9.05
CiliaryGanglion5.6
CingulateCortex7.75
Colorectaladenocarcinoma7.75
DorsalRootGanglion5.85
FetalThyroid8.3
Fetalbrain7.6
Fetalliver6.6
Fetallung5.5
GlobusPallidus6.25
Heart12.75
Hypothalamus8.45
Kidney6.35
Leukemia_chronicMyelogenousK-5626.9
Leukemia_promyelocytic-HL-606.65
Leukemialymphoblastic(MOLT-4)5.85
Liver11.15
Lung8.4
Lymphnode6.5
Lymphoma_burkitts(Daudi)9.75
Lymphoma_burkitts(Raji)10.7
MedullaOblongata6.95
OccipitalLobe6.85
OlfactoryBulb5.8
Ovary6.1
Pancreas6.15
PancreaticIslet8.15
ParietalLobe8.8
Pituitary14.9
Placenta7.9
Pons7.45
PrefrontalCortex9.45
Prostate8.9
Salivarygland6.2
SkeletalMuscle9.3
Skin6.15
SmoothMuscle8.45
Spinalcord8.2
SubthalamicNucleus7.6
SuperiorCervicalGanglion13.35
TemporalLobe7.2
Testis6.55
TestisGermCell5.95
TestisIntersitial6.3
TestisLeydigCell7.55
TestisSeminiferousTubule6.45
Thalamus7.8
Thymus5.5
Thyroid10.75
Tongue8.15
Tonsil7.4
Trachea6.4
TrigeminalGanglion8.15
Uterus6.1
UterusCorpus7.1
WholeBlood8.35
Wholebrain6.95
colon8
pineal_day9.44
pineal_night9.52
retina9.25
small_intestine9.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P64129
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.56 ± 0.65
Basal Forebrain6.28 ± 0.29
Basal Part of Pons6.24 ± 0.34
Cerebellar Cortex5.73 ± 0.23
Cerebellar Nuclei6.52 ± 0.5
Claustrum5.52 ± 0.88
Epithalamus5.87 ± 0.58
Frontal Lobe6.49 ± 0.38
Globus Pallidus6.89 ± 0.25
Hypothalamus6.39 ± 0.57
Insula6.17 ± 0.46
Limbic Lobe6.14 ± 0.56
Mesencephalon6.13 ± 0.58
Myelencephalon6.17 ± 0.46
Occipital Lobe5.79 ± 0.48
Parietal Lobe6.21 ± 0.5
Pontine Tegmentum6.24 ± 0.59
Striatum6.06 ± 0.49
Subthalamus6.55 ± 0.46
Temporal Lobe6.16 ± 0.4
Thalamus6.27 ± 0.36
White Matter7.97 ± 0.35
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Htatip2CBCerebellum30.8
52.6
Htatip2CTXCerebral cortex100
100
Htatip2HIPHippocampal region78.28
100
Htatip2HPFHippocampal formation77.44
100
Htatip2HYHypothalamus71.71
82.26
Htatip2LSXLateral septal complex64.46
63.82
Htatip2MBMidbrain54.4
62.24
Htatip2MYMedulla39.73
59.9
Htatip2OLFOlfactory bulb100
100
Htatip2PPons42.71
56.76
Htatip2PALPallidum61.79
79.5
Htatip2RHPRetrohippocampal region79.18
88.3
Htatip2sAMYStriatum-like amygdalar nuclei58
61.03
Htatip2STRStriatum58.88
57.54
Htatip2STRdStriatum dorsal region47.89
44.66
Htatip2STRvStriatum ventral region89.03
87.07
Htatip2THThalamus59.5
62.98
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
HTAI2_HUMAN_0 0 0 0 EILEQGLFSK PRIDE
HTAI2_HUMAN_19 13 19 31 SVFILGASGETGR PRIDE
HTAI2_HUMAN_2 10 2 11 AETEALSKLR PRIDE
PAp00012117 13 162 174 YSVFRPGVLLCDR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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