AutismKB 2.0

Annotation Detail for AGPAT2


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Basic Information Top
Gene Symbol:AGPAT2 ( 1-AGPAT2,BSCL,BSCL1,LPAAB,LPAAT-beta )
Gene Full Name: 1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)
Band: 9q34.3
Quick LinksEntrez ID:10555; OMIM: 603100; Uniprot ID:PLCB_HUMAN; ENSEMBL ID: ENSG00000169692; HGNC ID: 325
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst0 / 623190 
fetus17 / 56401230
neonate0 / 310970 
infant1 / 2362042
juvenile3 / 5555653
adult100 / 193912151
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma2 / 17475114
breast (mammary gland) tumor3 / 9417831
cervical tumor3 / 3436687
chondrosarcoma5 / 8282360
colorectal tumor11 / 11424696
esophageal tumor2 / 17290115
gastrointestinal tumor44 / 119369368
germ cell tumor8 / 26384530
glioma4 / 10688337
head and neck tumor6 / 13630244
kidney tumor12 / 68959174
leukemia5 / 9584252
liver tumor1 / 9635910
lung tumor14 / 103127135
lymphoma12 / 71755167
non-neoplasia3 / 9725030
normal94 / 336030727
ovarian tumor4 / 7668252
pancreatic tumor28 / 104616267
primitive neuroectodermal tumor of the CNS19 / 125680151
prostate cancer14 / 102680136
retinoblastoma4 / 4635686
skin tumor20 / 124949160
soft tissue/muscle tissue tumor7 / 12519155
uterine tumor6 / 9025766
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites34 / 40015849
bladder2 / 2975767
blood12 / 12347897
bone6 / 7165583
bone marrow0 / 488010 
brain14 / 110098912
cervix10 / 48171207
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue4 / 21572218
esophagus2 / 2020998
eye9 / 21105442
heart4 / 8962644
intestine27 / 234472115
kidney16 / 21177775
larynx0 / 241450 
liver7 / 20774333
lung26 / 33697477
lymph4 / 4427090
lymph node1 / 9161010
mammary gland5 / 15327132
mouth1 / 6705214
muscle1 / 1077159
nerve3 / 15768190
ovary5 / 10205148
pancreas32 / 214812148
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta5 / 28082517
prostate18 / 18934595
salivary gland4 / 20155198
skin23 / 210574109
spleen2 / 5395237
stomach11 / 96619113
testis3 / 3304429
thymus0 / 811310 
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus12 / 23287851
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 210678_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts13.6
Adipocyte205.3
AdrenalCortex23.7
Adrenalgland13.45
Amygdala11.35
Appendix14.35
AtrioventricularNode10.5
BDCA4+_DentriticCells26.1
Bonemarrow12.85
BronchialEpithelialCells12.6
CD105+_Endothelial12.7
CD14+_Monocytes61.4
CD19+_BCells(neg._sel.)13.8
CD33+_Myeloid72.4
CD34+31.25
CD4+_Tcells12.9
CD56+_NKCells14.55
CD71+_EarlyErythroid11.85
CD8+_Tcells11.85
CardiacMyocytes45.55
Caudatenucleus10.3
Cerebellum9.05
CerebellumPeduncles14
CiliaryGanglion9.9
CingulateCortex9.8
Colorectaladenocarcinoma97.75
DorsalRootGanglion10.65
FetalThyroid12.75
Fetalbrain11.15
Fetalliver13.55
Fetallung16.85
GlobusPallidus8.8
Heart85.8
Hypothalamus13.3
Kidney15.15
Leukemia_chronicMyelogenousK-56214.4
Leukemia_promyelocytic-HL-6011.45
Leukemialymphoblastic(MOLT-4)9.05
Liver78.65
Lung66.9
Lymphnode9.4
Lymphoma_burkitts(Daudi)13.5
Lymphoma_burkitts(Raji)19.15
MedullaOblongata11.55
OccipitalLobe10.35
OlfactoryBulb8.45
Ovary8.2
Pancreas20
PancreaticIslet17.5
ParietalLobe12.5
Pituitary14.85
Placenta11.75
Pons11.35
PrefrontalCortex15.6
Prostate27.5
Salivarygland11
SkeletalMuscle14.7
Skin10.15
SmoothMuscle17.2
Spinalcord13.65
SubthalamicNucleus13.7
SuperiorCervicalGanglion13.45
TemporalLobe9.45
Testis11.75
TestisGermCell12.15
TestisIntersitial10.6
TestisLeydigCell13.15
TestisSeminiferousTubule11.1
Thalamus11.2
Thymus10
Thyroid58.9
Tongue13.95
Tonsil12.3
Trachea11.45
TrigeminalGanglion11.95
Uterus10.15
UterusCorpus10.9
WholeBlood14.2
Wholebrain7.45
colon43.2
pineal_day15.2
pineal_night18.86
retina28.05
small_intestine72.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P26103
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.78 ± 0.86
Basal Forebrain2.31 ± 0.6
Basal Part of Pons1.83 ± 0.55
Cerebellar Cortex2.38 ± 0.81
Cerebellar Nuclei2.63 ± 0.78
Claustrum3.1 ± 0.86
Epithalamus2.75 ± 0.87
Frontal Lobe2.5 ± 0.56
Globus Pallidus2.91 ± 0.58
Hypothalamus2.64 ± 0.44
Insula2.4 ± 0.63
Limbic Lobe2.28 ± 0.69
Mesencephalon2.65 ± 0.69
Myelencephalon2.57 ± 0.65
Occipital Lobe2.13 ± 0.77
Parietal Lobe2.36 ± 0.8
Pontine Tegmentum2.41 ± 0.71
Striatum2 ± 0.79
Subthalamus2.85 ± 0.3
Temporal Lobe2.64 ± 0.69
Thalamus2.58 ± 0.54
White Matter1.8 ± 0.63
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00531932 22 1 22 MELWPCLAAALLLLLLLVQLSR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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