AutismKB 2.0

Annotation Detail for SLC35A1


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Basic Information Top
Gene Symbol:SLC35A1 ( CDG2F,CMPST,CST,FLJ76955,hCST )
Gene Full Name: solute carrier family 35 (CMP-sialic acid transporter), member A1
Band: 6q15
Quick LinksEntrez ID:10559; OMIM: 605634; Uniprot ID:S35A1_HUMAN; ENSEMBL ID: ENSG00000164414; HGNC ID: 11021
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus18 / 56401231
neonate1 / 3109732
infant3 / 23620127
juvenile1 / 5555617
adult67 / 193912134
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma2 / 17475114
breast (mammary gland) tumor3 / 9417831
cervical tumor1 / 3436629
chondrosarcoma1 / 8282312
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor5 / 11936941
germ cell tumor1 / 2638453
glioma1 / 1068839
head and neck tumor2 / 13630214
kidney tumor5 / 6895972
leukemia4 / 9584241
liver tumor2 / 9635920
lung tumor0 / 1031270 
lymphoma3 / 7175541
non-neoplasia4 / 9725041
normal142 / 336030742
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer3 / 10268029
retinoblastoma1 / 4635621
skin tumor2 / 12494916
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites1 / 4001524
bladder3 / 29757100
blood2 / 12347816
bone0 / 716550 
bone marrow3 / 4880161
brain48 / 110098943
cervix1 / 4817120
connective tissue2 / 14925513
ear2 / 16212123
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye8 / 21105437
heart5 / 8962655
intestine7 / 23447229
kidney14 / 21177766
larynx0 / 241450 
liver6 / 20774328
lung12 / 33697435
lymph0 / 442700 
lymph node8 / 9161087
mammary gland6 / 15327139
mouth2 / 6705229
muscle2 / 10771518
nerve0 / 157680 
ovary1 / 1020519
pancreas9 / 21481241
parathyroid1 / 2053948
pharynx3 / 4132872
pituitary gland0 / 165850 
placenta10 / 28082535
prostate10 / 18934552
salivary gland1 / 2015549
skin4 / 21057418
spleen2 / 5395237
stomach6 / 9661962
testis14 / 33044242
thymus6 / 8113173
thyroid2 / 4747342
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus16 / 23287868
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203306_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts12.3
Adipocyte9.8
AdrenalCortex11.05
Adrenalgland8.5
Amygdala22.95
Appendix10.05
AtrioventricularNode7.15
BDCA4+_DentriticCells53.1
Bonemarrow9.7
BronchialEpithelialCells10.5
CD105+_Endothelial19.45
CD14+_Monocytes150.5
CD19+_BCells(neg._sel.)21.1
CD33+_Myeloid228.45
CD34+62.25
CD4+_Tcells23.95
CD56+_NKCells59.7
CD71+_EarlyErythroid9.2
CD8+_Tcells28.95
CardiacMyocytes12.1
Caudatenucleus9.55
Cerebellum5.85
CerebellumPeduncles10.65
CiliaryGanglion6.8
CingulateCortex16.5
Colorectaladenocarcinoma9.7
DorsalRootGanglion7.15
FetalThyroid9.55
Fetalbrain53.05
Fetalliver8.55
Fetallung36.8
GlobusPallidus7.45
Heart10.5
Hypothalamus37.45
Kidney7.4
Leukemia_chronicMyelogenousK-5628.85
Leukemia_promyelocytic-HL-6014.65
Leukemialymphoblastic(MOLT-4)7.6
Liver9.9
Lung7.6
Lymphnode18.2
Lymphoma_burkitts(Daudi)12.5
Lymphoma_burkitts(Raji)22.45
MedullaOblongata8.9
OccipitalLobe15.7
OlfactoryBulb23.45
Ovary6.55
Pancreas7.65
PancreaticIslet12.9
ParietalLobe10.6
Pituitary18.4
Placenta9.7
Pons9.45
PrefrontalCortex53.9
Prostate25.05
Salivarygland12.2
SkeletalMuscle11
Skin6.55
SmoothMuscle11.05
Spinalcord15.2
SubthalamicNucleus9.15
SuperiorCervicalGanglion9.95
TemporalLobe9.05
Testis5.75
TestisGermCell13.65
TestisIntersitial8.2
TestisLeydigCell6.7
TestisSeminiferousTubule8.05
Thalamus10.25
Thymus7.05
Thyroid28.7
Tongue9.75
Tonsil9.5
Trachea11.05
TrigeminalGanglion9.7
Uterus20.9
UterusCorpus8.75
WholeBlood60.3
Wholebrain8.4
colon85.65
pineal_day29.4
pineal_night22.68
retina18.425
small_intestine26.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P58912
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.24 ± 0.51
Basal Forebrain6.01 ± 0.27
Basal Part of Pons6.56 ± 0.17
Cerebellar Cortex6.46 ± 0.18
Cerebellar Nuclei6.27 ± 0.31
Claustrum6.02 ± 0.36
Epithalamus5.81 ± 0.47
Frontal Lobe6.28 ± 0.27
Globus Pallidus5.59 ± 0.21
Hypothalamus6.29 ± 0.23
Insula6.39 ± 0.21
Limbic Lobe6.38 ± 0.32
Mesencephalon6.24 ± 0.33
Myelencephalon6.16 ± 0.35
Occipital Lobe6.39 ± 0.29
Parietal Lobe6.22 ± 0.35
Pontine Tegmentum6.11 ± 0.31
Striatum5.95 ± 0.27
Subthalamus6.3 ± 0.32
Temporal Lobe6.27 ± 0.4
Thalamus6.04 ± 0.25
White Matter5.67 ± 0.36
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Slc35a1CBCerebellum91.38
83.83
Slc35a1CTXCerebral cortex100
100
Slc35a1HIPHippocampal region100
100
Slc35a1HPFHippocampal formation100
100
Slc35a1HYHypothalamus100
89.39
Slc35a1LSXLateral septal complex99.29
83.97
Slc35a1MBMidbrain97.07
87.94
Slc35a1MYMedulla99.84
95.05
Slc35a1OLFOlfactory bulb100
100
Slc35a1PPons90.17
84.2
Slc35a1PALPallidum93.88
84.07
Slc35a1RHPRetrohippocampal region100
100
Slc35a1sAMYStriatum-like amygdalar nuclei100
98.16
Slc35a1STRStriatum100
98.81
Slc35a1STRdStriatum dorsal region100
96.99
Slc35a1STRvStriatum ventral region100
100
Slc35a1THThalamus100
100
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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