AutismKB 2.0

Annotation Detail for OLFM4


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Basic Information Top
Gene Symbol:OLFM4 ( GC1,GW112,KIAA4294,OLM4,OlfD,UNQ362,bA209J19.1,hGC-1,hOLfD )
Gene Full Name: olfactomedin 4
Band: 13q14.3
Quick LinksEntrez ID:10562; OMIM: NA; Uniprot ID:OLFM4_HUMAN; ENSEMBL ID: ENSG00000102837; HGNC ID: 17190
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus2 / 5640123
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult158 / 193912181
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor70 / 114246612
esophageal tumor0 / 172900 
gastrointestinal tumor10 / 11936983
germ cell tumor3 / 26384511
glioma0 / 1068830 
head and neck tumor2 / 13630214
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal219 / 336030765
ovarian tumor0 / 766820 
pancreatic tumor12 / 104616114
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor46 / 90257509
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder79 / 297572654
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain2 / 11009891
cervix1 / 4817120
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine176 / 234472750
kidney38 / 211777179
larynx0 / 241450 
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland5 / 15327132
mouth2 / 6705229
muscle8 / 10771574
nerve2 / 15768126
ovary0 / 1020510 
pancreas22 / 214812102
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate19 / 189345100
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach11 / 96619113
testis1 / 3304423
thymus7 / 8113186
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus49 / 232878210
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212768_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts9.1
Adipocyte8.55
AdrenalCortex13.25
Adrenalgland8.4
Amygdala8.6
Appendix15.7
AtrioventricularNode13.85
BDCA4+_DentriticCells8
Bonemarrow1962.25
BronchialEpithelialCells8.25
CD105+_Endothelial8.65
CD14+_Monocytes9.95
CD19+_BCells(neg._sel.)8.95
CD33+_Myeloid10.7
CD34+10.35
CD4+_Tcells8.75
CD56+_NKCells9.6
CD71+_EarlyErythroid8.85
CD8+_Tcells7.5
CardiacMyocytes21
Caudatenucleus8.05
Cerebellum7.35
CerebellumPeduncles12.85
CiliaryGanglion10.25
CingulateCortex9.85
Colorectaladenocarcinoma8.85
DorsalRootGanglion10.8
FetalThyroid10.2
Fetalbrain8.25
Fetalliver8.2
Fetallung9.55
GlobusPallidus7.85
Heart18.55
Hypothalamus8.95
Kidney9.15
Leukemia_chronicMyelogenousK-5627.85
Leukemia_promyelocytic-HL-607.7
Leukemialymphoblastic(MOLT-4)6.6
Liver15.65
Lung9.5
Lymphnode6.9
Lymphoma_burkitts(Daudi)12.2
Lymphoma_burkitts(Raji)15.3
MedullaOblongata7.85
OccipitalLobe7.95
OlfactoryBulb6.85
Ovary7.6
Pancreas720.05
PancreaticIslet2262.55
ParietalLobe11.15
Pituitary10.35
Placenta8.45
Pons9.25
PrefrontalCortex10.15
Prostate860.65
Salivarygland161.6
SkeletalMuscle17
Skin11.25
SmoothMuscle9.85
Spinalcord9.35
SubthalamicNucleus9.25
SuperiorCervicalGanglion22.45
TemporalLobe9
Testis7.65
TestisGermCell6.85
TestisIntersitial8.2
TestisLeydigCell10.35
TestisSeminiferousTubule7.95
Thalamus9.5
Thymus7.3
Thyroid10.2
Tongue11.7
Tonsil9.05
Trachea7.3
TrigeminalGanglion18.15
Uterus6.8
UterusCorpus10.45
WholeBlood21.4
Wholebrain6.85
colon2949.05
pineal_day10.76
pineal_night10.46
retina10.975
small_intestine16940.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P2789
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.39 ± 1.05
Basal Forebrain2.11 ± 0.34
Basal Part of Pons1.78 ± 0.5
Cerebellar Cortex1.78 ± 0.69
Cerebellar Nuclei2.32 ± 0.76
Claustrum2.93 ± 0.91
Epithalamus1.78 ± 0.99
Frontal Lobe1.83 ± 0.7
Globus Pallidus2.81 ± 0.37
Hypothalamus2.05 ± 0.61
Insula1.85 ± 0.57
Limbic Lobe1.99 ± 0.63
Mesencephalon2.18 ± 0.71
Myelencephalon1.99 ± 0.7
Occipital Lobe2.03 ± 0.56
Parietal Lobe2 ± 0.84
Pontine Tegmentum1.96 ± 0.72
Striatum2.18 ± 0.57
Subthalamus2.11 ± 0.7
Temporal Lobe1.86 ± 0.64
Thalamus1.94 ± 0.58
White Matter2.63 ± 0.51
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Olfm4CBCerebellum1.54
2.07
Olfm4CTXCerebral cortex0.47
0.59
Olfm4HIPHippocampal region4.19
4.27
Olfm4HPFHippocampal formation3.61
3.48
Olfm4HYHypothalamus0.09
0.12
Olfm4LSXLateral septal complex0.28
0.2
Olfm4MBMidbrain0.81
0.95
Olfm4MYMedulla2
2.05
Olfm4OLFOlfactory bulb0.68
0.55
Olfm4PPons0.69
0.77
Olfm4PALPallidum0.73
0.84
Olfm4RHPRetrohippocampal region2.61
2.44
Olfm4sAMYStriatum-like amygdalar nuclei0.27
0.27
Olfm4STRStriatum0.53
0.47
Olfm4STRdStriatum dorsal region0.58
0.48
Olfm4STRvStriatum ventral region0.65
0.65
Olfm4THThalamus0.28
0.26
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00037692 22 59 80 SLGSGGSVSQLFSNFTGSVDDR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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