AutismKB 2.0

Annotation Detail for SLC34A2


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Basic Information Top
Gene Symbol:SLC34A2 ( FLJ90534,NAPI-3B,NAPI-IIb,NPTIIb )
Gene Full Name: solute carrier family 34 (sodium phosphate), member 2
Band: 4p15.2
Quick LinksEntrez ID:10568; OMIM: 604217; Uniprot ID:NPT2B_HUMAN; ENSEMBL ID: ENSG00000157765; HGNC ID: 11020
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus3 / 5640125
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult69 / 193912135
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor6 / 9417863
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor23 / 136302168
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor7 / 10312767
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal45 / 336030713
ovarian tumor36 / 76682469
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain7 / 11009896
cervix0 / 481710 
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine0 / 2344720 
kidney4 / 21177718
larynx1 / 2414541
liver0 / 2077430 
lung37 / 336974109
lymph0 / 442700 
lymph node0 / 916100 
mammary gland12 / 15327178
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary36 / 102051352
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis1 / 3304423
thymus2 / 8113124
thyroid23 / 47473484
tonsil0 / 169990 
trachea10 / 52413190
umbilical cord0 / 136800 
uterus7 / 23287830
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204124_at
Cell line Expression level Expression bar
721_B_lymphoblasts9.35
Adipocyte13.15
AdrenalCortex17.05
Adrenalgland13.05
Amygdala26.25
Appendix20.5
AtrioventricularNode12.2
BDCA4+_DentriticCells9.95
Bonemarrow17.85
BronchialEpithelialCells12.3
CD105+_Endothelial12.9
CD14+_Monocytes14.25
CD19+_BCells(neg._sel.)13.15
CD33+_Myeloid15.2
CD34+14.2
CD4+_Tcells8.8
CD56+_NKCells13.6
CD71+_EarlyErythroid13
CD8+_Tcells7.45
CardiacMyocytes23.95
Caudatenucleus13.95
Cerebellum11.55
CerebellumPeduncles19.6
CiliaryGanglion15.1
CingulateCortex15.5
Colorectaladenocarcinoma13.45
DorsalRootGanglion12.55
FetalThyroid15.35
Fetalbrain12.55
Fetalliver12.55
Fetallung237.8
GlobusPallidus11.3
Heart27.35
Hypothalamus15.35
Kidney13.95
Leukemia_chronicMyelogenousK-56212.15
Leukemia_promyelocytic-HL-6011.8
Leukemialymphoblastic(MOLT-4)9.6
Liver26.35
Lung976
Lymphnode10.85
Lymphoma_burkitts(Daudi)19.7
Lymphoma_burkitts(Raji)22.95
MedullaOblongata16.55
OccipitalLobe12.45
OlfactoryBulb10.3
Ovary11
Pancreas12.15
PancreaticIslet16.75
ParietalLobe17.05
Pituitary16.3
Placenta12.55
Pons17.65
PrefrontalCortex15.15
Prostate15.35
Salivarygland22.1
SkeletalMuscle25.75
Skin14.55
SmoothMuscle15.25
Spinalcord14.6
SubthalamicNucleus13.35
SuperiorCervicalGanglion38.65
TemporalLobe13.9
Testis11.55
TestisGermCell10.2
TestisIntersitial15.65
TestisLeydigCell14.75
TestisSeminiferousTubule11.75
Thalamus15.7
Thymus10.3
Thyroid18.55
Tongue22.1
Tonsil13.9
Trachea41.35
TrigeminalGanglion22.15
Uterus14.15
UterusCorpus15.65
WholeBlood13.5
Wholebrain11.3
colon13.65
pineal_day15.7
pineal_night15.88
retina18.1
small_intestine29.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P133036
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala1.9 ± 0.98
Basal Forebrain1.46 ± 0.19
Basal Part of Pons1.13 ± 0.33
Cerebellar Cortex1.27 ± 0.64
Cerebellar Nuclei1.72 ± 0.71
Claustrum2.37 ± 0.82
Epithalamus1.21 ± 0.72
Frontal Lobe1.29 ± 0.57
Globus Pallidus2.17 ± 0.44
Hypothalamus1.57 ± 0.71
Insula1.36 ± 0.48
Limbic Lobe1.51 ± 0.76
Mesencephalon1.64 ± 0.69
Myelencephalon1.49 ± 0.65
Occipital Lobe1.51 ± 0.58
Parietal Lobe1.45 ± 0.62
Pontine Tegmentum1.47 ± 0.6
Striatum1.6 ± 0.47
Subthalamus1.6 ± 0.57
Temporal Lobe1.35 ± 0.55
Thalamus1.43 ± 0.56
White Matter2.06 ± 0.39
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Slc34a2CBCerebellum30.53
35
Slc34a2CTXCerebral cortex56.33
45.96
Slc34a2HIPHippocampal region23.34
25.36
Slc34a2HPFHippocampal formation24.06
23.03
Slc34a2HYHypothalamus18.28
14.34
Slc34a2LSXLateral septal complex36.46
26.2
Slc34a2MBMidbrain26.03
23.84
Slc34a2MYMedulla23.88
23.1
Slc34a2OLFOlfactory bulb50.75
43.56
Slc34a2PPons17.75
17.01
Slc34a2PALPallidum25.52
21.65
Slc34a2RHPRetrohippocampal region25.67
19.69
Slc34a2sAMYStriatum-like amygdalar nuclei30.3
21.51
Slc34a2STRStriatum30.63
22.07
Slc34a2STRdStriatum dorsal region25.41
17.96
Slc34a2STRvStriatum ventral region45.53
32.55
Slc34a2THThalamus13.7
10.91
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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