Annotation Detail for SLU7
Basic Information Top
| Gene Symbol: | SLU7 ( 9G8,MGC9280,hSlu7 ) |
|---|---|
| Gene Full Name: | SLU7 splicing factor homolog (S. cerevisiae) |
| Band: | 5q33.3 |
| Quick Links | Entrez ID:10569; OMIM: 605974; Uniprot ID:SLU7_HUMAN; ENSEMBL ID: ENSG00000164609; HGNC ID: 16939 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.435342
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 23 / 564012 | 40 | |
| neonate | 0 / 31097 | 0 | |
| infant | 4 / 23620 | 169 |  |
| juvenile | 0 / 55556 | 0 | |
| adult | 120 / 1939121 | 61 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 11 / 82823 | 132 | |
| colorectal tumor | 6 / 114246 | 52 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 19 / 263845 | 72 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 11 / 136302 | 80 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 9 / 95842 | 93 | |
| liver tumor | 6 / 96359 | 62 | |
| lung tumor | 1 / 103127 | 9 |  |
| lymphoma | 9 / 71755 | 125 | |
| non-neoplasia | 7 / 97250 | 71 | |
| normal | 219 / 3360307 | 65 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 10 / 104616 | 95 | |
| primitive neuroectodermal tumor of the CNS | 7 / 125680 | 55 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 8 / 124949 | 64 | |
| soft tissue/muscle tissue tumor | 7 / 125191 | 55 | |
| uterine tumor | 8 / 90257 | 88 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 1 / 29757 | 33 | |
| blood | 15 / 123478 | 121 | |
| bone | 9 / 71655 | 125 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 82 / 1100989 | 74 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 12 / 149255 | 80 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 12 / 211054 | 56 | |
| heart | 9 / 89626 | 100 | |
| intestine | 16 / 234472 | 68 | |
| kidney | 14 / 211777 | 66 | |
| larynx | 1 / 24145 | 41 | |
| liver | 17 / 207743 | 81 | |
| lung | 13 / 336974 | 38 | |
| lymph | 7 / 44270 | 158 | |
| lymph node | 14 / 91610 | 152 | |
| mammary gland | 10 / 153271 | 65 | |
| mouth | 5 / 67052 | 74 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 11 / 214812 | 51 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 8 / 41328 | 193 | |
| pituitary gland | 3 / 16585 | 180 | |
| placenta | 17 / 280825 | 60 | |
| prostate | 7 / 189345 | 36 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 14 / 210574 | 66 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 0 / 96619 | 0 | |
| testis | 27 / 330442 | 81 | |
| thymus | 4 / 81131 | 49 | |
| thyroid | 4 / 47473 | 84 | |
| tonsil | 4 / 16999 | 235 |  |
| trachea | 3 / 52413 | 57 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 22 / 232878 | 94 | |
| vascular | 3 / 51780 | 57 | |
Microarray in - Probe name: A_24_P174824
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.92 ± 0.38 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.98 ± 0.13 | |
| Basal Part of Pons | 9.21 ± 0.26 | |
| Cerebellar Cortex | 9 ± 0.14 | |
| Cerebellar Nuclei | 9.15 ± 0.19 | |
| Claustrum | 8.9 ± 0.36 | |
| Epithalamus | 9.11 ± 0.27 | |
| Frontal Lobe | 9.27 ± 0.29 | |
| Globus Pallidus | 8.77 ± 0.33 | |
| Hypothalamus | 9.28 ± 0.19 | |
| Insula | 9.35 ± 0.26 | |
| Limbic Lobe | 9.13 ± 0.39 | |
| Mesencephalon | 9.21 ± 0.31 | |
| Myelencephalon | 9.13 ± 0.32 | |
| Occipital Lobe | 9.21 ± 0.31 | |
| Parietal Lobe | 9.32 ± 0.37 | |
| Pontine Tegmentum | 9.16 ± 0.31 | |
| Striatum | 8.93 ± 0.4 | |
| Subthalamus | 9.6 ± 0.23 | |
| Temporal Lobe | 9.2 ± 0.26 | |
| Thalamus | 9.06 ± 0.27 | |
| White Matter | 8.66 ± 0.1 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| D11Ertd730e | CB | Cerebellum | 22.59 | |
| 25.99 | | |||
| D11Ertd730e | CTX | Cerebral cortex | 41.78 | |
| 35.05 | | |||
| D11Ertd730e | HIP | Hippocampal region | 26.57 | |
| 35.56 | | |||
| D11Ertd730e | HPF | Hippocampal formation | 22.91 | |
| 27.33 | | |||
| D11Ertd730e | HY | Hypothalamus | 8.36 | |
| 7.47 | | |||
| D11Ertd730e | LSX | Lateral septal complex | 4.26 | |
| 3.34 | | |||
| D11Ertd730e | MB | Midbrain | 17.17 | |
| 17.39 | | |||
| D11Ertd730e | MY | Medulla | 22.99 | |
| 28.24 | | |||
| D11Ertd730e | OLF | Olfactory bulb | 26.28 | |
| 23.46 | | |||
| D11Ertd730e | P | Pons | 17.25 | |
| 20.25 | | |||
| D11Ertd730e | PAL | Pallidum | 16.4 | |
| 18.05 | | |||
| D11Ertd730e | RHP | Retrohippocampal region | 16.61 | |
| 15.58 | | |||
| D11Ertd730e | sAMY | Striatum-like amygdalar nuclei | 20.25 | |
| 17.53 | | |||
| D11Ertd730e | STR | Striatum | 13.23 | |
| 11.19 | | |||
| D11Ertd730e | STRd | Striatum dorsal region | 12.82 | |
| 11.09 | | |||
| D11Ertd730e | STRv | Striatum ventral region | 13.43 | |
| 10.19 | | |||
| D11Ertd730e | TH | Thalamus | 18.61 | |
| 18.41 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00513767 | 12 | 338 | 349 | GSEVHLQADPTK | Peptide Atlas |