AutismKB 2.0

Annotation Detail for SLCO1B1


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Basic Information Top
Gene Symbol:SLCO1B1 ( LST-1,LST1,MGC133282,OATP-C,OATP1B1,OATP2,OATPC,SLC21A6 )
Gene Full Name: solute carrier organic anion transporter family, member 1B1
Band: 12p12.1
Quick LinksEntrez ID:10599; OMIM: 604843; Uniprot ID:SO1B1_HUMAN; ENSEMBL ID: ENSG00000134538; HGNC ID: 10959
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus6 / 56401210
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult8 / 19391214
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor2 / 9635920
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal37 / 336030711
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain0 / 11009890 
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver34 / 207743163
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland1 / 1532716
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen1 / 5395218
stomach0 / 966190 
testis1 / 3304423
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 210366_at
Cell line Expression level Expression bar
721_B_lymphoblasts10.75
Adipocyte12.95
AdrenalCortex18.8
Adrenalgland12.8
Amygdala13.15
Appendix19.65
AtrioventricularNode13.45
BDCA4+_DentriticCells10.1
Bonemarrow14.5
BronchialEpithelialCells12.35
CD105+_Endothelial12.95
CD14+_Monocytes13.8
CD19+_BCells(neg._sel.)13.15
CD33+_Myeloid15.2
CD34+16.1
CD4+_Tcells11.9
CD56+_NKCells12.85
CD71+_EarlyErythroid12.35
CD8+_Tcells10.65
CardiacMyocytes35.25
Caudatenucleus13
Cerebellum10.65
CerebellumPeduncles21.75
CiliaryGanglion12.5
CingulateCortex14.55
Colorectaladenocarcinoma12.9
DorsalRootGanglion14.1
FetalThyroid15.2
Fetalbrain12.4
Fetalliver75.85
Fetallung10.6
GlobusPallidus11.2
Heart29.9
Hypothalamus13.85
Kidney13.85
Leukemia_chronicMyelogenousK-56211.85
Leukemia_promyelocytic-HL-6011.55
Leukemialymphoblastic(MOLT-4)12.75
Liver29.75
Lung14.2
Lymphnode11
Lymphoma_burkitts(Daudi)24.05
Lymphoma_burkitts(Raji)21.5
MedullaOblongata11.6
OccipitalLobe11.65
OlfactoryBulb10.1
Ovary14.7
Pancreas11.25
PancreaticIslet15.2
ParietalLobe14.9
Pituitary16.15
Placenta12.95
Pons13.15
PrefrontalCortex14.55
Prostate14.05
Salivarygland10.5
SkeletalMuscle20.05
Skin14.9
SmoothMuscle14.7
Spinalcord13.85
SubthalamicNucleus13.05
SuperiorCervicalGanglion16.45
TemporalLobe12.25
Testis11.2
TestisGermCell10.4
TestisIntersitial12.25
TestisLeydigCell13.65
TestisSeminiferousTubule11.55
Thalamus14.05
Thymus9.95
Thyroid14.5
Tongue18.9
Tonsil13.75
Trachea10.85
TrigeminalGanglion18.05
Uterus9.35
UterusCorpus13.1
WholeBlood13.35
Wholebrain9.95
colon11.3
pineal_day13.9
pineal_night14.38
retina15.525
small_intestine10.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_16203_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.43 ± 1.09
Basal Forebrain2.19 ± 0.61
Basal Part of Pons1.67 ± 0.6
Cerebellar Cortex1.93 ± 0.92
Cerebellar Nuclei2.33 ± 0.72
Claustrum3 ± 1
Epithalamus1.8 ± 0.79
Frontal Lobe1.88 ± 0.82
Globus Pallidus2.61 ± 0.31
Hypothalamus2.01 ± 0.64
Insula2.05 ± 0.71
Limbic Lobe1.98 ± 0.67
Mesencephalon2.24 ± 0.81
Myelencephalon2.07 ± 0.79
Occipital Lobe2.08 ± 0.7
Parietal Lobe2.04 ± 0.79
Pontine Tegmentum2.1 ± 0.83
Striatum2.16 ± 0.49
Subthalamus2.15 ± 0.7
Temporal Lobe1.99 ± 0.93
Thalamus2.15 ± 1.04
White Matter2.67 ± 0.62
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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