AutismKB 2.0

Annotation Detail for STAMBP


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Basic Information Top
Gene Symbol:STAMBP ( AMSH,MGC126516,MGC126518 )
Gene Full Name: STAM binding protein
Band: 2p13.1
Quick LinksEntrez ID:10617; OMIM: 606247; Uniprot ID:STABP_HUMAN; ENSEMBL ID: ENSG00000124356; HGNC ID: 16950
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst4 / 6231964
fetus37 / 56401265
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult108 / 193912155
embryoid body3 / 7076142
blastocyst0 / 623190 
fetus3 / 5640125
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult33 / 193912117
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma5 / 17475286
breast (mammary gland) tumor5 / 9417853
cervical tumor1 / 3436629
chondrosarcoma10 / 82823120
colorectal tumor8 / 11424670
esophageal tumor1 / 1729057
gastrointestinal tumor5 / 11936941
germ cell tumor5 / 26384518
glioma6 / 10688356
head and neck tumor3 / 13630222
kidney tumor2 / 6895929
leukemia8 / 9584283
liver tumor4 / 9635941
lung tumor3 / 10312729
lymphoma7 / 7175597
non-neoplasia2 / 9725020
normal164 / 336030748
ovarian tumor4 / 7668252
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS7 / 12568055
prostate cancer6 / 10268058
retinoblastoma6 / 46356129
skin tumor4 / 12494932
soft tissue/muscle tissue tumor15 / 125191119
uterine tumor2 / 9025722
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor1 / 3436629
chondrosarcoma4 / 8282348
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor2 / 2638457
glioma1 / 1068839
head and neck tumor1 / 1363027
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor2 / 9635920
lung tumor2 / 10312719
lymphoma0 / 717550 
non-neoplasia5 / 9725051
normal27 / 33603078
ovarian tumor6 / 7668278
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder4 / 29757134
blood7 / 12347856
bone9 / 71655125
bone marrow1 / 4880120
brain24 / 110098921
cervix1 / 4817120
connective tissue10 / 14925566
ear2 / 16212123
embryonic tissue9 / 21572241
esophagus1 / 2020949
eye15 / 21105471
heart4 / 8962644
intestine26 / 234472110
kidney15 / 21177770
larynx1 / 2414541
liver8 / 20774338
lung18 / 33697453
lymph2 / 4427045
lymph node6 / 9161065
mammary gland9 / 15327158
mouth0 / 670520 
muscle6 / 10771555
nerve0 / 157680 
ovary5 / 10205148
pancreas5 / 21481223
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta8 / 28082528
prostate9 / 18934547
salivary gland0 / 201550 
skin16 / 21057475
spleen1 / 5395218
stomach3 / 9661931
testis5 / 33044215
thymus0 / 811310 
thyroid2 / 4747342
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus21 / 23287890
vascular1 / 5178019
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood0 / 1234780 
bone3 / 7165541
bone marrow0 / 488010 
brain6 / 11009895
cervix1 / 4817120
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye2 / 2110549
heart0 / 896260 
intestine3 / 23447212
kidney1 / 2117774
larynx0 / 241450 
liver4 / 20774319
lung4 / 33697411
lymph0 / 442700 
lymph node2 / 9161021
mammary gland2 / 15327113
mouth0 / 670520 
muscle2 / 10771518
nerve0 / 157680 
ovary6 / 10205158
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta6 / 28082521
prostate0 / 1893450 
salivary gland0 / 201550 
skin1 / 2105744
spleen0 / 539520 
stomach0 / 966190 
testis2 / 3304426
thymus1 / 8113112
thyroid3 / 4747363
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202811_at
Cell line Expression level Expression bar
721_B_lymphoblasts166.3
Adipocyte28.5
AdrenalCortex20.65
Adrenalgland13.55
Amygdala57.5
Appendix35.8
AtrioventricularNode20.05
BDCA4+_DentriticCells96.35
Bonemarrow20.45
BronchialEpithelialCells122
CD105+_Endothelial50.7
CD14+_Monocytes83.6
CD19+_BCells(neg._sel.)80.05
CD33+_Myeloid74.75
CD34+121.25
CD4+_Tcells57.05
CD56+_NKCells119.45
CD71+_EarlyErythroid30.85
CD8+_Tcells62.4
CardiacMyocytes40.2
Caudatenucleus36.65
Cerebellum22.5
CerebellumPeduncles40.55
CiliaryGanglion18.6
CingulateCortex36.6
Colorectaladenocarcinoma50.2
DorsalRootGanglion22.95
FetalThyroid34
Fetalbrain35.5
Fetalliver24.35
Fetallung28.85
GlobusPallidus22.6
Heart38.55
Hypothalamus96
Kidney20.7
Leukemia_chronicMyelogenousK-56259
Leukemia_promyelocytic-HL-6033.05
Leukemialymphoblastic(MOLT-4)52.5
Liver36.3
Lung34.8
Lymphnode36.05
Lymphoma_burkitts(Daudi)45.7
Lymphoma_burkitts(Raji)39.55
MedullaOblongata35.1
OccipitalLobe44.55
OlfactoryBulb35.95
Ovary23.7
Pancreas28.7
PancreaticIslet31.75
ParietalLobe52.4
Pituitary31.4
Placenta27.65
Pons33.75
PrefrontalCortex41.45
Prostate45.95
Salivarygland27
SkeletalMuscle38.75
Skin27
SmoothMuscle35.75
Spinalcord163.4
SubthalamicNucleus21.5
SuperiorCervicalGanglion33.55
TemporalLobe32.35
Testis21.25
TestisGermCell28.3
TestisIntersitial11
TestisLeydigCell25.65
TestisSeminiferousTubule29.85
Thalamus42.15
Thymus27.75
Thyroid46
Tongue35.15
Tonsil26.05
Trachea15.45
TrigeminalGanglion34.2
Uterus32.5
UterusCorpus14.35
WholeBlood46.3
Wholebrain49.25
colon54.35
pineal_day95.18
pineal_night106.44
retina55.65
small_intestine43.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_8900_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.89 ± 0.47
Basal Forebrain7.19 ± 0.28
Basal Part of Pons7.18 ± 0.4
Cerebellar Cortex6.78 ± 0.23
Cerebellar Nuclei7.79 ± 0.45
Claustrum7.21 ± 0.3
Epithalamus6.83 ± 0.45
Frontal Lobe6.93 ± 0.42
Globus Pallidus8.01 ± 0.27
Hypothalamus6.74 ± 0.55
Insula6.8 ± 0.38
Limbic Lobe6.88 ± 0.36
Mesencephalon7.18 ± 0.42
Myelencephalon7.05 ± 0.38
Occipital Lobe7.24 ± 0.35
Parietal Lobe7.02 ± 0.31
Pontine Tegmentum7.14 ± 0.37
Striatum7.4 ± 0.35
Subthalamus7.27 ± 0.21
Temporal Lobe6.89 ± 0.32
Thalamus7.24 ± 0.31
White Matter8.61 ± 0.43
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
StambpCBCerebellum12.92
21.19
StambpCTXCerebral cortex76.84
66.83
StambpHIPHippocampal region46.78
70.69
StambpHPFHippocampal formation49.85
62.32
StambpHYHypothalamus12.26
11.2
StambpLSXLateral septal complex6.59
5.42
StambpMBMidbrain15.51
17.62
StambpMYMedulla17.92
23.85
StambpOLFOlfactory bulb46.47
44.04
StambpPPons16.46
21.67
StambpPALPallidum30.44
32.67
StambpRHPRetrohippocampal region56.87
52.64
StambpsAMYStriatum-like amygdalar nuclei48.73
39.97
StambpSTRStriatum44.99
35.28
StambpSTRdStriatum dorsal region48.45
38.24
StambpSTRvStriatum ventral region46.4
34.66
StambpTHThalamus44.4
42.37
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00005368 13 379 391 LTDHGLEEISSCR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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