AutismKB 2.0

Annotation Detail for KHDRBS3


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Basic Information Top
Gene Symbol:KHDRBS3 ( Etle,SALP,SLM-2,SLM2,T-STAR,TSTAR,etoile )
Gene Full Name: KH domain containing, RNA binding, signal transduction associated 3
Band: 8q24.23
Quick LinksEntrez ID:10656; OMIM: 610421; Uniprot ID:KHDR3_HUMAN; ENSEMBL ID: ENSG00000131773; HGNC ID: 18117
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst1 / 6231916
fetus29 / 56401251
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult105 / 193912154
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma3 / 8282336
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor6 / 26384522
glioma7 / 10688365
head and neck tumor3 / 13630222
kidney tumor0 / 689590 
leukemia1 / 9584210
liver tumor1 / 9635910
lung tumor3 / 10312729
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal74 / 336030722
ovarian tumor4 / 7668252
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor9 / 12494972
soft tissue/muscle tissue tumor70 / 125191559
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood1 / 1234788
bone2 / 7165527
bone marrow0 / 488010 
brain43 / 110098939
cervix0 / 481710 
connective tissue71 / 149255475
ear1 / 1621261
embryonic tissue4 / 21572218
esophagus0 / 202090 
eye4 / 21105418
heart2 / 8962622
intestine2 / 2344728
kidney6 / 21177728
larynx0 / 241450 
liver4 / 20774319
lung4 / 33697411
lymph0 / 442700 
lymph node0 / 916100 
mammary gland2 / 15327113
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary5 / 10205148
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta4 / 28082514
prostate2 / 18934510
salivary gland3 / 20155148
skin13 / 21057461
spleen1 / 5395218
stomach0 / 966190 
testis17 / 33044251
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 209781_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts9.15
Adipocyte20.25
AdrenalCortex21.45
Adrenalgland16.35
Amygdala130.55
Appendix20.7
AtrioventricularNode18.8
BDCA4+_DentriticCells9.35
Bonemarrow18.4
BronchialEpithelialCells19.05
CD105+_Endothelial13.35
CD14+_Monocytes13
CD19+_BCells(neg._sel.)17.15
CD33+_Myeloid13.45
CD34+23.75
CD4+_Tcells11.85
CD56+_NKCells9.8
CD71+_EarlyErythroid16
CD8+_Tcells10.6
CardiacMyocytes29.55
Caudatenucleus22.65
Cerebellum16.65
CerebellumPeduncles35.05
CiliaryGanglion16
CingulateCortex167.7
Colorectaladenocarcinoma21.05
DorsalRootGanglion16.25
FetalThyroid23.95
Fetalbrain310.7
Fetalliver17.65
Fetallung17
GlobusPallidus57.85
Heart26.7
Hypothalamus59.25
Kidney17.1
Leukemia_chronicMyelogenousK-56214.35
Leukemia_promyelocytic-HL-6018.25
Leukemialymphoblastic(MOLT-4)15.8
Liver37.8
Lung21.1
Lymphnode13.85
Lymphoma_burkitts(Daudi)23.75
Lymphoma_burkitts(Raji)28.8
MedullaOblongata89.65
OccipitalLobe138.4
OlfactoryBulb113.85
Ovary11.7
Pancreas15.45
PancreaticIslet22.1
ParietalLobe127.95
Pituitary23.45
Placenta15.15
Pons78.15
PrefrontalCortex389.45
Prostate25.35
Salivarygland14.7
SkeletalMuscle25.95
Skin16.1
SmoothMuscle18.15
Spinalcord27.25
SubthalamicNucleus125.8
SuperiorCervicalGanglion27.9
TemporalLobe160
Testis681.75
TestisGermCell871.3
TestisIntersitial1045.8
TestisLeydigCell497.35
TestisSeminiferousTubule568.7
Thalamus46.7
Thymus15.65
Thyroid24.8
Tongue20.4
Tonsil18.45
Trachea17.5
TrigeminalGanglion26.1
Uterus17.1
UterusCorpus18.35
WholeBlood16
Wholebrain275.45
colon21.85
pineal_day25.04
pineal_night38.68
retina25.225
small_intestine20.05
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_10281_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.56 ± 0.36
Basal Forebrain7.23 ± 0.32
Basal Part of Pons8.02 ± 0.38
Cerebellar Cortex6.93 ± 0.5
Cerebellar Nuclei6.96 ± 0.38
Claustrum7.36 ± 0.37
Epithalamus6.78 ± 0.53
Frontal Lobe7.78 ± 0.47
Globus Pallidus6.59 ± 1.05
Hypothalamus6.95 ± 0.35
Insula7.78 ± 0.34
Limbic Lobe7.71 ± 0.74
Mesencephalon7.21 ± 0.53
Myelencephalon7.47 ± 0.7
Occipital Lobe7.26 ± 0.56
Parietal Lobe7.81 ± 0.49
Pontine Tegmentum7.27 ± 0.56
Striatum6.76 ± 0.97
Subthalamus6.95 ± 0.27
Temporal Lobe7.71 ± 0.4
Thalamus7.75 ± 0.47
White Matter7.65 ± 0.1
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Khdrbs3CBCerebellum23.81
32.36
Khdrbs3CTXCerebral cortex100
100
Khdrbs3HIPHippocampal region95.14
100
Khdrbs3HPFHippocampal formation100
100
Khdrbs3HYHypothalamus27.3
23.54
Khdrbs3LSXLateral septal complex29.43
26.16
Khdrbs3MBMidbrain30.88
31.4
Khdrbs3MYMedulla41.31
50.98
Khdrbs3OLFOlfactory bulb78.81
83.89
Khdrbs3PPons32.99
37.6
Khdrbs3PALPallidum32.47
33.89
Khdrbs3RHPRetrohippocampal region100
100
Khdrbs3sAMYStriatum-like amygdalar nuclei63.39
58.44
Khdrbs3STRStriatum36.85
33.24
Khdrbs3STRdStriatum dorsal region33.34
29.88
Khdrbs3STRvStriatum ventral region29.89
26.03
Khdrbs3THThalamus77.83
81.37
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00081759 9 5 13 YLPELMAEK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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