AutismKB 2.0

Annotation Detail for CELF2


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Basic Information Top
Gene Symbol:CELF2 ( BRUNOL3,CUGBP2,ETR-3,ETR3,NAPOR )
Gene Full Name: CUGBP, Elav-like family member 2
Band: 10p14
Quick LinksEntrez ID:10659; OMIM: 602538; Uniprot ID:CELF2_HUMAN; ENSEMBL ID: ENSG00000048740; HGNC ID: 2550
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst5 / 6231980
fetus151 / 564012267
neonate8 / 31097257
infant2 / 2362084
juvenile3 / 5555653
adult145 / 193912174
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor0 / 343660 
chondrosarcoma4 / 8282348
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor8 / 11936967
germ cell tumor27 / 263845102
glioma7 / 10688365
head and neck tumor4 / 13630229
kidney tumor8 / 68959116
leukemia38 / 95842396
liver tumor0 / 963590 
lung tumor2 / 10312719
lymphoma0 / 717550 
non-neoplasia9 / 9725092
normal533 / 3360307158
ovarian tumor1 / 7668213
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer2 / 10268019
retinoblastoma2 / 4635643
skin tumor16 / 124949128
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue5 / 13106381
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood48 / 123478388
bone1 / 7165513
bone marrow9 / 48801184
brain242 / 1100989219
cervix0 / 481710 
connective tissue10 / 14925566
ear0 / 162120 
embryonic tissue22 / 215722101
esophagus0 / 202090 
eye29 / 211054137
heart17 / 89626189
intestine17 / 23447272
kidney13 / 21177761
larynx0 / 241450 
liver3 / 20774314
lung28 / 33697483
lymph0 / 442700 
lymph node36 / 91610392
mammary gland9 / 15327158
mouth8 / 67052119
muscle6 / 10771555
nerve2 / 15768126
ovary1 / 1020519
pancreas9 / 21481241
parathyroid0 / 205390 
pharynx6 / 41328145
pituitary gland1 / 1658560
placenta9 / 28082532
prostate4 / 18934521
salivary gland1 / 2015549
skin46 / 210574218
spleen13 / 53952240
stomach9 / 9661993
testis14 / 33044242
thymus23 / 81131283
thyroid3 / 4747363
tonsil0 / 169990 
trachea5 / 5241395
umbilical cord0 / 136800 
uterus9 / 23287838
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202157_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts566
Adipocyte366.95
AdrenalCortex29.95
Adrenalgland22.9
Amygdala773.95
Appendix70.35
AtrioventricularNode80.95
BDCA4+_DentriticCells1000.5
Bonemarrow502.9
BronchialEpithelialCells52.6
CD105+_Endothelial120.25
CD14+_Monocytes863.6
CD19+_BCells(neg._sel.)917.8
CD33+_Myeloid1722.95
CD34+1714.1
CD4+_Tcells1807.5
CD56+_NKCells1375.6
CD71+_EarlyErythroid17.4
CD8+_Tcells2096.85
CardiacMyocytes80.55
Caudatenucleus90.2
Cerebellum187.05
CerebellumPeduncles163.95
CiliaryGanglion55.15
CingulateCortex865
Colorectaladenocarcinoma11.5
DorsalRootGanglion106.7
FetalThyroid56.75
Fetalbrain1198.75
Fetalliver23.8
Fetallung89.65
GlobusPallidus388.85
Heart104.7
Hypothalamus148.6
Kidney11.3
Leukemia_chronicMyelogenousK-562154.65
Leukemia_promyelocytic-HL-6013.6
Leukemialymphoblastic(MOLT-4)95.75
Liver22.7
Lung505.65
Lymphnode153.5
Lymphoma_burkitts(Daudi)21.45
Lymphoma_burkitts(Raji)19.65
MedullaOblongata441.3
OccipitalLobe630.15
OlfactoryBulb366.15
Ovary98.65
Pancreas37.3
PancreaticIslet55.15
ParietalLobe368.2
Pituitary162.3
Placenta27.25
Pons368.75
PrefrontalCortex3215.15
Prostate281.45
Salivarygland269.05
SkeletalMuscle23.9
Skin52
SmoothMuscle229.3
Spinalcord18.7
SubthalamicNucleus630
SuperiorCervicalGanglion83.65
TemporalLobe355.4
Testis20
TestisGermCell47.45
TestisIntersitial20.65
TestisLeydigCell19.55
TestisSeminiferousTubule25.95
Thalamus291.2
Thymus978.25
Thyroid47.5
Tongue51.9
Tonsil274.25
Trachea98.15
TrigeminalGanglion106.3
Uterus253.9
UterusCorpus57.45
WholeBlood1389.25
Wholebrain893.5
colon207.5
pineal_day250.34
pineal_night217.34
retina433.975
small_intestine217.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P115645
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.95 ± 0.36
Basal Forebrain8.47 ± 0.23
Basal Part of Pons9 ± 0.22
Cerebellar Cortex8.17 ± 0.25
Cerebellar Nuclei7.44 ± 0.44
Claustrum8.96 ± 0.53
Epithalamus8.24 ± 0.35
Frontal Lobe8.43 ± 0.5
Globus Pallidus7.59 ± 0.52
Hypothalamus7.97 ± 0.32
Insula8.57 ± 0.34
Limbic Lobe8.89 ± 0.43
Mesencephalon8.29 ± 0.49
Myelencephalon8.5 ± 0.43
Occipital Lobe8.95 ± 0.4
Parietal Lobe8.56 ± 0.47
Pontine Tegmentum8.23 ± 0.43
Striatum8.73 ± 0.44
Subthalamus7.83 ± 0.36
Temporal Lobe8.62 ± 0.35
Thalamus8.64 ± 0.46
White Matter6.81 ± 0.32
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Cugbp2CBCerebellum61.12
100
Cugbp2CTXCerebral cortex100
100
Cugbp2HIPHippocampal region100
100
Cugbp2HPFHippocampal formation100
100
Cugbp2HYHypothalamus59.41
56.04
Cugbp2LSXLateral septal complex100
100
Cugbp2MBMidbrain55.77
56.12
Cugbp2MYMedulla34.7
38.65
Cugbp2OLFOlfactory bulb100
100
Cugbp2PPons34.75
37.01
Cugbp2PALPallidum74.94
80.44
Cugbp2RHPRetrohippocampal region100
100
Cugbp2sAMYStriatum-like amygdalar nuclei100
100
Cugbp2STRStriatum100
100
Cugbp2STRdStriatum dorsal region100
100
Cugbp2STRvStriatum ventral region100
100
Cugbp2THThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00000590 18 167 184 AMHQSQTMEGCSSPIVVK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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