AutismKB 2.0

Annotation Detail for CGRRF1


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Basic Information Top
Gene Symbol:CGRRF1 ( CGR19,RNF197 )
Gene Full Name: cell growth regulator with ring finger domain 1
Band: 14q22.2
Quick LinksEntrez ID:10668; OMIM: 606138; Uniprot ID:CGRF1_HUMAN; ENSEMBL ID: ENSG00000100532; HGNC ID: 15528
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus29 / 56401251
neonate1 / 3109732
infant0 / 236200 
juvenile0 / 555560 
adult35 / 193912118
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor3 / 26384511
glioma3 / 10688328
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma1 / 7175513
non-neoplasia2 / 9725020
normal108 / 336030732
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS7 / 12568055
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor2 / 12494916
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites1 / 4001524
bladder1 / 2975733
blood1 / 1234788
bone1 / 7165513
bone marrow0 / 488010 
brain31 / 110098928
cervix0 / 481710 
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye3 / 21105414
heart0 / 896260 
intestine1 / 2344724
kidney7 / 21177733
larynx0 / 241450 
liver0 / 2077430 
lung6 / 33697417
lymph0 / 442700 
lymph node8 / 9161087
mammary gland1 / 1532716
mouth0 / 670520 
muscle2 / 10771518
nerve0 / 157680 
ovary1 / 1020519
pancreas6 / 21481227
parathyroid2 / 2053997
pharynx3 / 4132872
pituitary gland3 / 16585180
placenta2 / 2808257
prostate5 / 18934526
salivary gland0 / 201550 
skin3 / 21057414
spleen1 / 5395218
stomach0 / 966190 
testis18 / 33044254
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord1 / 1368073
uterus2 / 2328788
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204605_at
Cell line Expression level Expression bar
721_B_lymphoblasts14.4
Adipocyte7.5
AdrenalCortex7.75
Adrenalgland5.65
Amygdala16.65
Appendix7.4
AtrioventricularNode5.8
BDCA4+_DentriticCells10.95
Bonemarrow6.8
BronchialEpithelialCells16.35
CD105+_Endothelial7.55
CD14+_Monocytes9.5
CD19+_BCells(neg._sel.)77.85
CD33+_Myeloid11.2
CD34+10.55
CD4+_Tcells28.35
CD56+_NKCells30.5
CD71+_EarlyErythroid9.4
CD8+_Tcells23.35
CardiacMyocytes9.3
Caudatenucleus7.35
Cerebellum5.4
CerebellumPeduncles10.35
CiliaryGanglion6.2
CingulateCortex8
Colorectaladenocarcinoma6.65
DorsalRootGanglion5.45
FetalThyroid7.85
Fetalbrain6.3
Fetalliver5.75
Fetallung7.05
GlobusPallidus8.25
Heart9
Hypothalamus22.6
Kidney5.6
Leukemia_chronicMyelogenousK-5626.05
Leukemia_promyelocytic-HL-605.9
Leukemialymphoblastic(MOLT-4)5.6
Liver9
Lung7.05
Lymphnode8.2
Lymphoma_burkitts(Daudi)9.35
Lymphoma_burkitts(Raji)10.15
MedullaOblongata7.8
OccipitalLobe8.3
OlfactoryBulb10.2
Ovary4.9
Pancreas5.45
PancreaticIslet18.8
ParietalLobe8.1
Pituitary12.6
Placenta6.4
Pons8.15
PrefrontalCortex10.25
Prostate10.55
Salivarygland8.05
SkeletalMuscle9.8
Skin5.55
SmoothMuscle7.7
Spinalcord11.4
SubthalamicNucleus6.4
SuperiorCervicalGanglion8.85
TemporalLobe8.55
Testis26
TestisGermCell73.6
TestisIntersitial105.6
TestisLeydigCell34.7
TestisSeminiferousTubule37.15
Thalamus7.05
Thymus4.85
Thyroid16.65
Tongue6.6
Tonsil6.9
Trachea5.55
TrigeminalGanglion10.55
Uterus9.15
UterusCorpus10.8
WholeBlood11.9
Wholebrain8.15
colon13.9
pineal_day32.5
pineal_night27.24
retina16.425
small_intestine13.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P37283
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.26 ± 0.42
Basal Forebrain6.2 ± 0.16
Basal Part of Pons6.01 ± 0.33
Cerebellar Cortex6.37 ± 0.25
Cerebellar Nuclei6.32 ± 0.24
Claustrum5.93 ± 0.36
Epithalamus6.17 ± 0.61
Frontal Lobe6.05 ± 0.42
Globus Pallidus6.05 ± 0.4
Hypothalamus6.33 ± 0.21
Insula6.16 ± 0.22
Limbic Lobe5.93 ± 0.37
Mesencephalon6.21 ± 0.39
Myelencephalon6.13 ± 0.44
Occipital Lobe6.4 ± 0.26
Parietal Lobe6.14 ± 0.25
Pontine Tegmentum6.22 ± 0.32
Striatum6.3 ± 0.45
Subthalamus6.04 ± 0.15
Temporal Lobe6.04 ± 0.35
Thalamus6.19 ± 0.37
White Matter6.52 ± 0.29
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Cgrrf1CBCerebellum3.53
3.61
Cgrrf1CTXCerebral cortex0.29
0.43
Cgrrf1HIPHippocampal region0.5
0.58
Cgrrf1HPFHippocampal formation0.56
0.64
Cgrrf1HYHypothalamus0.31
0.25
Cgrrf1LSXLateral septal complex0.09
0.13
Cgrrf1MBMidbrain0.44
0.45
Cgrrf1MYMedulla1.98
2.33
Cgrrf1OLFOlfactory bulb0.49
1.28
Cgrrf1PPons1.57
1.76
Cgrrf1PALPallidum0.29
0.2
Cgrrf1RHPRetrohippocampal region0.73
0.81
Cgrrf1sAMYStriatum-like amygdalar nuclei0.23
0.21
Cgrrf1STRStriatum0.14
0.15
Cgrrf1STRdStriatum dorsal region0.1
0.12
Cgrrf1STRvStriatum ventral region0.29
0.29
Cgrrf1THThalamus0.26
0.21
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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