Annotation Detail for GNA13
Basic Information Top
| Gene Symbol: | GNA13 ( G13,MGC46138 ) |
|---|---|
| Gene Full Name: | guanine nucleotide binding protein (G protein), alpha 13 |
| Band: | 17q24.1 |
| Quick Links | Entrez ID:10672; OMIM: 604406; Uniprot ID:GNA13_HUMAN; ENSEMBL ID: ENSG00000120063; HGNC ID: 4381 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.515018
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 6 / 70761 | 84 |  |
| blastocyst | 6 / 62319 | 96 | |
| fetus | 35 / 564012 | 62 | |
| neonate | 3 / 31097 | 96 | |
| infant | 2 / 23620 | 84 | |
| juvenile | 4 / 55556 | 71 | |
| adult | 100 / 1939121 | 51 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 3 / 17475 | 171 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 |  |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 7 / 114246 | 61 | |
| esophageal tumor | 3 / 17290 | 173 | |
| gastrointestinal tumor | 8 / 119369 | 67 | |
| germ cell tumor | 17 / 263845 | 64 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 7 / 136302 | 51 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 7 / 96359 | 72 | |
| lung tumor | 6 / 103127 | 58 | |
| lymphoma | 6 / 71755 | 83 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 228 / 3360307 | 67 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 12 / 125680 | 95 | |
| prostate cancer | 7 / 102680 | 68 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 14 / 124949 | 112 | |
| soft tissue/muscle tissue tumor | 6 / 125191 | 47 | |
| uterine tumor | 13 / 90257 | 144 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 1 / 29757 | 33 | |
| blood | 8 / 123478 | 64 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 5 / 48801 | 102 | |
| brain | 74 / 1100989 | 67 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 19 / 215722 | 88 | |
| esophagus | 3 / 20209 | 148 | |
| eye | 4 / 211054 | 18 | |
| heart | 0 / 89626 | 0 | |
| intestine | 9 / 234472 | 38 | |
| kidney | 13 / 211777 | 61 | |
| larynx | 0 / 24145 | 0 | |
| liver | 10 / 207743 | 48 | |
| lung | 16 / 336974 | 47 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 23 / 91610 | 251 |  |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 7 / 67052 | 104 | |
| muscle | 9 / 107715 | 83 | |
| nerve | 3 / 15768 | 190 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 2 / 16585 | 120 | |
| placenta | 24 / 280825 | 85 | |
| prostate | 8 / 189345 | 42 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 20 / 210574 | 94 | |
| spleen | 5 / 53952 | 92 | |
| stomach | 6 / 96619 | 62 | |
| testis | 22 / 330442 | 66 | |
| thymus | 17 / 81131 | 209 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 5 / 52413 | 95 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 19 / 232878 | 81 | |
| vascular | 5 / 51780 | 96 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 206917_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 7.7 | |
| Adipocyte | 4.65 | |
| AdrenalCortex | 5.15 | |
| Adrenalgland | 4.05 | |
| Amygdala | 4.85 | |
| Appendix | 4.9 | |
| AtrioventricularNode | 3.8 | |
| BDCA4+_DentriticCells | 10.1 | |
| Bonemarrow | 4.85 | |
| BronchialEpithelialCells | 4.65 | |
| CD105+_Endothelial | 4.75 | |
| CD14+_Monocytes | 5 | |
| CD19+_BCells(neg._sel.) | 5.15 | |
| CD33+_Myeloid | 6.1 | |
| CD34+ | 6.05 | |
| CD4+_Tcells | 6 | |
| CD56+_NKCells | 6.55 | |
| CD71+_EarlyErythroid | 5.25 | |
| CD8+_Tcells | 7.25 | |
| CardiacMyocytes | 6.55 | |
| Caudatenucleus | 4.25 | |
| Cerebellum | 3.85 | |
| CerebellumPeduncles | 5.45 | |
| CiliaryGanglion | 3.4 | |
| CingulateCortex | 4.9 | |
| Colorectaladenocarcinoma | 4.75 | |
| DorsalRootGanglion | 3.75 | |
| FetalThyroid | 4.6 | |
| Fetalbrain | 4.65 | |
| Fetalliver | 4.15 | |
| Fetallung | 3.8 | |
| GlobusPallidus | 3.5 | |
| Heart | 6.5 | |
| Hypothalamus | 5.05 | |
| Kidney | 4 | |
| Leukemia_chronicMyelogenousK-562 | 4.3 | |
| Leukemia_promyelocytic-HL-60 | 4.15 | |
| Leukemialymphoblastic(MOLT-4) | 3.75 | |
| Liver | 6.55 | |
| Lung | 5.15 | |
| Lymphnode | 4.05 | |
| Lymphoma_burkitts(Daudi) | 6.15 | |
| Lymphoma_burkitts(Raji) | 6.85 | |
| MedullaOblongata | 4.4 | |
| OccipitalLobe | 4.25 | |
| OlfactoryBulb | 3.7 | |
| Ovary | 3.2 | |
| Pancreas | 3.85 | |
| PancreaticIslet | 5.05 | |
| ParietalLobe | 5.1 | |
| Pituitary | 5.5 | |
| Placenta | 4.95 | |
| Pons | 4.5 | |
| PrefrontalCortex | 5.75 | |
| Prostate | 5.45 | |
| Salivarygland | 3.85 | |
| SkeletalMuscle | 5.95 | |
| Skin | 3.7 | |
| SmoothMuscle | 5.35 | |
| Spinalcord | 5.05 | |
| SubthalamicNucleus | 4.4 | |
| SuperiorCervicalGanglion | 5.85 | |
| TemporalLobe | 4.3 | |
| Testis | 4 | |
| TestisGermCell | 3.85 | |
| TestisIntersitial | 3.95 | |
| TestisLeydigCell | 4.7 | |
| TestisSeminiferousTubule | 4.05 | |
| Thalamus | 4.8 | |
| Thymus | 3.65 | |
| Thyroid | 5.8 | |
| Tongue | 4.75 | |
| Tonsil | 4.65 | |
| Trachea | 3.95 | |
| TrigeminalGanglion | 4.8 | |
| Uterus | 3.8 | |
| UterusCorpus | 4.55 | |
| WholeBlood | 6.5 | |
| Wholebrain | 3.85 | |
| colon | 5.1 | |
| pineal_day | 9.52 | |
| pineal_night | 5.76 | |
| retina | 5.7 | |
| small_intestine | 4.85 | |
- Probe name: A_24_P150874
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.78 ± 0.54 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.04 ± 0.29 | |
| Basal Part of Pons | 4.85 ± 0.32 | |
| Cerebellar Cortex | 5.79 ± 0.28 | |
| Cerebellar Nuclei | 5.51 ± 0.5 | |
| Claustrum | 5.54 ± 0.58 | |
| Epithalamus | 6.24 ± 0.3 | |
| Frontal Lobe | 5.47 ± 0.45 | |
| Globus Pallidus | 6.68 ± 0.57 | |
| Hypothalamus | 5.8 ± 0.36 | |
| Insula | 5.65 ± 0.29 | |
| Limbic Lobe | 5.4 ± 0.48 | |
| Mesencephalon | 5.87 ± 0.37 | |
| Myelencephalon | 5.69 ± 0.54 | |
| Occipital Lobe | 5.92 ± 0.4 | |
| Parietal Lobe | 5.59 ± 0.47 | |
| Pontine Tegmentum | 5.74 ± 0.39 | |
| Striatum | 6.11 ± 0.52 | |
| Subthalamus | 5.19 ± 0.16 | |
| Temporal Lobe | 5.43 ± 0.37 | |
| Thalamus | 5.74 ± 0.37 | |
| White Matter | 6.27 ± 0.07 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Gna13 | CB | Cerebellum | 5.77 | |
| 7.48 | | |||
| Gna13 | CTX | Cerebral cortex | 0.85 | |
| 0.99 | | |||
| Gna13 | HIP | Hippocampal region | 0.44 | |
| 0.45 | | |||
| Gna13 | HPF | Hippocampal formation | 0.49 | |
| 0.51 | | |||
| Gna13 | HY | Hypothalamus | 0.16 | |
| 0.17 | | |||
| Gna13 | LSX | Lateral septal complex | 0.16 | |
| 0.12 | | |||
| Gna13 | MB | Midbrain | 0.55 | |
| 0.78 | | |||
| Gna13 | MY | Medulla | 1.45 | |
| 2.12 | | |||
| Gna13 | OLF | Olfactory bulb | 0.48 | |
| 0.47 | | |||
| Gna13 | P | Pons | 0.51 | |
| 0.74 | | |||
| Gna13 | PAL | Pallidum | 0.54 | |
| 0.76 | | |||
| Gna13 | RHP | Retrohippocampal region | 0.58 | |
| 0.59 | | |||
| Gna13 | sAMY | Striatum-like amygdalar nuclei | 0.08 | |
| 0.13 | | |||
| Gna13 | STR | Striatum | 0.47 | |
| 0.63 | | |||
| Gna13 | STRd | Striatum dorsal region | 0.6 | |
| 0.92 | | |||
| Gna13 | STRv | Striatum ventral region | 0.23 | |
| 0.2 | | |||
| Gna13 | TH | Thalamus | 0.56 | |
| 0.84 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| GNA13_HUMAN_128 | 12 | 128 | 139 | APMAAQGMVETR | PRIDE |
| GNA13_HUMAN_140 | 10 | 140 | 149 | VFLQYLPAIR | PRIDE |
| GNA13_HUMAN_50 | 11 | 50 | 60 | ILLLGAGESGK | PRIDE |
| PAp00001839 | 12 | 361 | 372 | DVKDTILHDNLK | Peptide Atlas |