AutismKB 2.0

Annotation Detail for CNPY3


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Basic Information Top
Gene Symbol:CNPY3 ( CAG4A,ERDA5,PRAT4A,TNRC5 )
Gene Full Name: canopy 3 homolog (zebrafish)
Band: 6p21.1
Quick LinksEntrez ID:10695; OMIM: 610774; Uniprot ID:CNPY3_HUMAN; ENSEMBL ID: ENSG00000137161; HGNC ID: 11968
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst5 / 6231980
fetus25 / 56401244
neonate1 / 3109732
infant0 / 236200 
juvenile0 / 555560 
adult144 / 193912174
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma3 / 17475171
breast (mammary gland) tumor5 / 9417853
cervical tumor2 / 3436658
chondrosarcoma2 / 8282324
colorectal tumor11 / 11424696
esophageal tumor1 / 1729057
gastrointestinal tumor2 / 11936916
germ cell tumor8 / 26384530
glioma14 / 106883130
head and neck tumor3 / 13630222
kidney tumor4 / 6895958
leukemia16 / 95842166
liver tumor7 / 9635972
lung tumor11 / 103127106
lymphoma10 / 71755139
non-neoplasia0 / 972500 
normal166 / 336030749
ovarian tumor13 / 76682169
pancreatic tumor6 / 10461657
primitive neuroectodermal tumor of the CNS19 / 125680151
prostate cancer11 / 102680107
retinoblastoma9 / 46356194
skin tumor23 / 124949184
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor15 / 90257166
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood23 / 123478186
bone6 / 7165583
bone marrow0 / 488010 
brain55 / 110098949
cervix2 / 4817141
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue15 / 21572269
esophagus1 / 2020949
eye17 / 21105480
heart9 / 89626100
intestine23 / 23447298
kidney6 / 21177728
larynx1 / 2414541
liver11 / 20774352
lung19 / 33697456
lymph5 / 44270112
lymph node7 / 9161076
mammary gland12 / 15327178
mouth1 / 6705214
muscle2 / 10771518
nerve0 / 157680 
ovary22 / 102051215
pancreas10 / 21481246
parathyroid4 / 20539194
pharynx1 / 4132824
pituitary gland1 / 1658560
placenta16 / 28082556
prostate13 / 18934568
salivary gland1 / 2015549
skin24 / 210574113
spleen1 / 5395218
stomach0 / 966190 
testis17 / 33044251
thymus5 / 8113161
thyroid3 / 4747363
tonsil5 / 16999294
trachea0 / 524130 
umbilical cord0 / 136800 
uterus17 / 23287872
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 217931_at
Cell line Expression level Expression bar
721_B_lymphoblasts175.55
Adipocyte55.4
AdrenalCortex75.85
Adrenalgland110.2
Amygdala54.5
Appendix26.9
AtrioventricularNode41.15
BDCA4+_DentriticCells681.5
Bonemarrow203.3
BronchialEpithelialCells54.15
CD105+_Endothelial32.05
CD14+_Monocytes554.9
CD19+_BCells(neg._sel.)179.25
CD33+_Myeloid296.1
CD34+178.3
CD4+_Tcells142.75
CD56+_NKCells93.45
CD71+_EarlyErythroid36.75
CD8+_Tcells129.9
CardiacMyocytes73.95
Caudatenucleus107.5
Cerebellum107.35
CerebellumPeduncles110.15
CiliaryGanglion35.15
CingulateCortex56.55
Colorectaladenocarcinoma86
DorsalRootGanglion41.4
FetalThyroid89.05
Fetalbrain52.65
Fetalliver59.7
Fetallung95.25
GlobusPallidus35.6
Heart205.45
Hypothalamus81.2
Kidney133.15
Leukemia_chronicMyelogenousK-56292.35
Leukemia_promyelocytic-HL-6064.1
Leukemialymphoblastic(MOLT-4)179.25
Liver204
Lung151.55
Lymphnode159.35
Lymphoma_burkitts(Daudi)132.5
Lymphoma_burkitts(Raji)146.4
MedullaOblongata50.6
OccipitalLobe58.95
OlfactoryBulb96.2
Ovary44.95
Pancreas56.7
PancreaticIslet92.8
ParietalLobe117.75
Pituitary122.6
Placenta75.75
Pons35.6
PrefrontalCortex83.05
Prostate227.65
Salivarygland64.7
SkeletalMuscle90.9
Skin20.65
SmoothMuscle62.2
Spinalcord150.55
SubthalamicNucleus35.5
SuperiorCervicalGanglion60.4
TemporalLobe54.4
Testis181.75
TestisGermCell46.4
TestisIntersitial57.2
TestisLeydigCell73.55
TestisSeminiferousTubule57.7
Thalamus115.8
Thymus273.75
Thyroid116.1
Tongue53.55
Tonsil103.9
Trachea119.95
TrigeminalGanglion40.2
Uterus70.6
UterusCorpus39.4
WholeBlood526.25
Wholebrain90.7
colon43.5
pineal_day74.28
pineal_night69.9
retina108.6
small_intestine45.65
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P277747
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.81 ± 0.7
Basal Forebrain3.76 ± 0.17
Basal Part of Pons4.12 ± 0.49
Cerebellar Cortex3.99 ± 0.44
Cerebellar Nuclei3.54 ± 0.62
Claustrum3.49 ± 0.76
Epithalamus4.43 ± 0.29
Frontal Lobe3.89 ± 0.48
Globus Pallidus3.98 ± 0.49
Hypothalamus3.98 ± 0.82
Insula3.7 ± 0.52
Limbic Lobe3.73 ± 0.46
Mesencephalon3.89 ± 0.64
Myelencephalon3.78 ± 0.52
Occipital Lobe3.59 ± 0.37
Parietal Lobe3.85 ± 0.65
Pontine Tegmentum3.76 ± 0.5
Striatum3.48 ± 0.52
Subthalamus3.59 ± 0.49
Temporal Lobe3.97 ± 0.5
Thalamus3.67 ± 0.61
White Matter4.21 ± 0.36
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Tnrc5CBCerebellum29.03
44.09
Tnrc5CTXCerebral cortex100
100
Tnrc5HIPHippocampal region77.78
100
Tnrc5HPFHippocampal formation82.51
100
Tnrc5HYHypothalamus73.37
68.04
Tnrc5LSXLateral septal complex93.88
79.57
Tnrc5MBMidbrain55.73
54.15
Tnrc5MYMedulla32.01
38.5
Tnrc5OLFOlfactory bulb80.28
81.76
Tnrc5PPons41.91
50.03
Tnrc5PALPallidum61.42
61.8
Tnrc5RHPRetrohippocampal region89.86
85.88
Tnrc5sAMYStriatum-like amygdalar nuclei71.97
60.43
Tnrc5STRStriatum67.84
56.79
Tnrc5STRdStriatum dorsal region64.23
54.02
Tnrc5STRvStriatum ventral region72.95
59.45
Tnrc5THThalamus59.59
57.04
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00005002 11 96 106 LIEVTETICKR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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