AutismKB 2.0

Annotation Detail for CETP


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Basic Information Top
Gene Symbol:CETP ( HDLCQ10 )
Gene Full Name: cholesteryl ester transfer protein, plasma
Band: 16q13
Quick LinksEntrez ID:1071; OMIM: 118470; Uniprot ID:CETP_HUMAN; ENSEMBL ID: ENSG00000087237; HGNC ID: 1869
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus15 / 56401226
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult21 / 193912110
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor3 / 26384511
glioma2 / 10688318
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor2 / 9635920
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal44 / 336030713
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain7 / 11009896
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye2 / 2110549
heart0 / 896260 
intestine0 / 2344720 
kidney2 / 2117779
larynx0 / 241450 
liver2 / 2077439
lung1 / 3369742
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas2 / 2148129
parathyroid2 / 2053997
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta12 / 28082542
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen4 / 5395274
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 206210_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts3.95
Adipocyte3.05
AdrenalCortex3.2
Adrenalgland2.55
Amygdala3.25
Appendix3.1
AtrioventricularNode2.3
BDCA4+_DentriticCells3.45
Bonemarrow3
BronchialEpithelialCells3.05
CD105+_Endothelial3.25
CD14+_Monocytes3.3
CD19+_BCells(neg._sel.)3.3
CD33+_Myeloid4
CD34+3.95
CD4+_Tcells3.35
CD56+_NKCells3.7
CD71+_EarlyErythroid2.85
CD8+_Tcells3
CardiacMyocytes3.85
Caudatenucleus2.75
Cerebellum2.5
CerebellumPeduncles3.5
CiliaryGanglion2.15
CingulateCortex3.15
Colorectaladenocarcinoma3.1
DorsalRootGanglion2.35
FetalThyroid3
Fetalbrain3.05
Fetalliver3.3
Fetallung2.6
GlobusPallidus2.25
Heart4.75
Hypothalamus3.35
Kidney2.5
Leukemia_chronicMyelogenousK-5622.75
Leukemia_promyelocytic-HL-602.7
Leukemialymphoblastic(MOLT-4)2.45
Liver20.7
Lung3.4
Lymphnode14.5
Lymphoma_burkitts(Daudi)3.9
Lymphoma_burkitts(Raji)4.3
MedullaOblongata2.8
OccipitalLobe2.75
OlfactoryBulb2.45
Ovary2.05
Pancreas2.45
PancreaticIslet3.25
ParietalLobe3.25
Pituitary3.6
Placenta10
Pons2.9
PrefrontalCortex3.9
Prostate3.6
Salivarygland2.4
SkeletalMuscle3.7
Skin2.35
SmoothMuscle3.5
Spinalcord3.3
SubthalamicNucleus2.8
SuperiorCervicalGanglion3.7
TemporalLobe2.8
Testis2.65
TestisGermCell2.6
TestisIntersitial2.6
TestisLeydigCell3.05
TestisSeminiferousTubule2.65
Thalamus3.1
Thymus2.45
Thyroid3.9
Tongue2.95
Tonsil3
Trachea2.6
TrigeminalGanglion3.05
Uterus2.55
UterusCorpus2.75
WholeBlood3.4
Wholebrain2.65
colon3.05
pineal_day3.86
pineal_night3.76
retina3.75
small_intestine3
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_320_PI417507815
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.78 ± 1.03
Basal Forebrain2.34 ± 0.65
Basal Part of Pons2.35 ± 0.64
Cerebellar Cortex1.99 ± 0.58
Cerebellar Nuclei2.55 ± 0.73
Claustrum2.98 ± 0.87
Epithalamus2.15 ± 1.11
Frontal Lobe2.42 ± 0.86
Globus Pallidus2.81 ± 1.13
Hypothalamus2.23 ± 0.74
Insula2.22 ± 0.71
Limbic Lobe2.39 ± 0.84
Mesencephalon2.58 ± 0.84
Myelencephalon2.39 ± 0.78
Occipital Lobe2.23 ± 0.83
Parietal Lobe2.13 ± 0.82
Pontine Tegmentum2.44 ± 0.92
Striatum3.09 ± 0.69
Subthalamus2.44 ± 0.76
Temporal Lobe2.32 ± 0.77
Thalamus2.54 ± 0.82
White Matter2.13 ± 0.12
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
CETP_HUMAN_453 15 453 467 GVSLFDIINPEIITR PRIDE
PAp00025401 26 251 276 GHFIYKNVSEDLPLPTFSPTLLGDSR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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