AutismKB 2.0

Annotation Detail for STAG3


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Basic Information Top
Gene Symbol:STAG3 ( - )
Gene Full Name: stromal antigen 3
Band: 7q22.1
Quick LinksEntrez ID:10734; OMIM: 608489; Uniprot ID:STAG3_HUMAN; ENSEMBL ID: ENSG00000066923; HGNC ID: 11356
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus5 / 5640128
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult17 / 19391218
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor5 / 26384518
glioma1 / 1068839
head and neck tumor1 / 1363027
kidney tumor0 / 689590 
leukemia5 / 9584252
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma8 / 71755111
non-neoplasia0 / 972500 
normal47 / 336030713
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain17 / 110098915
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye2 / 2110549
heart1 / 8962611
intestine3 / 23447212
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung2 / 3369745
lymph0 / 442700 
lymph node12 / 91610130
mammary gland0 / 1532710 
mouth0 / 670520 
muscle3 / 10771527
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta3 / 28082510
prostate1 / 1893455
salivary gland0 / 201550 
skin3 / 21057414
spleen3 / 5395255
stomach0 / 966190 
testis184 / 330442556
thymus2 / 8113124
thyroid0 / 474730 
tonsil2 / 16999117
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219753_at
Cell line Expression level Expression bar
721_B_lymphoblasts175.1
Adipocyte4.95
AdrenalCortex5.55
Adrenalgland4.45
Amygdala5.3
Appendix5.7
AtrioventricularNode5.35
BDCA4+_DentriticCells5.75
Bonemarrow5.1
BronchialEpithelialCells4.8
CD105+_Endothelial7.5
CD14+_Monocytes5.4
CD19+_BCells(neg._sel.)162.3
CD33+_Myeloid6.7
CD34+9.8
CD4+_Tcells5.55
CD56+_NKCells7.3
CD71+_EarlyErythroid4.8
CD8+_Tcells4.75
CardiacMyocytes6.55
Caudatenucleus4.65
Cerebellum4.2
CerebellumPeduncles5.95
CiliaryGanglion3.95
CingulateCortex6.7
Colorectaladenocarcinoma5.15
DorsalRootGanglion4.05
FetalThyroid4.95
Fetalbrain5.75
Fetalliver4.6
Fetallung4
GlobusPallidus3.85
Heart7
Hypothalamus5.45
Kidney4.45
Leukemia_chronicMyelogenousK-5624.8
Leukemia_promyelocytic-HL-604.6
Leukemialymphoblastic(MOLT-4)4.15
Liver6.95
Lung5.6
Lymphnode5.9
Lymphoma_burkitts(Daudi)14.4
Lymphoma_burkitts(Raji)9.7
MedullaOblongata4.75
OccipitalLobe4.65
OlfactoryBulb5.75
Ovary3.45
Pancreas4.15
PancreaticIslet5.55
ParietalLobe5.5
Pituitary6.2
Placenta5.1
Pons5.15
PrefrontalCortex6.35
Prostate6.05
Salivarygland4.1
SkeletalMuscle6.4
Skin4.2
SmoothMuscle5.7
Spinalcord5.55
SubthalamicNucleus4.75
SuperiorCervicalGanglion6.65
TemporalLobe6
Testis178.85
TestisGermCell169.1
TestisIntersitial116.15
TestisLeydigCell164.5
TestisSeminiferousTubule105
Thalamus5.25
Thymus28
Thyroid6.4
Tongue5.35
Tonsil6.1
Trachea4.35
TrigeminalGanglion6.05
Uterus4.25
UterusCorpus4.7
WholeBlood5.45
Wholebrain4.35
colon5.25
pineal_day6.24
pineal_night6.16
retina6.225
small_intestine5.05
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_12726_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.98 ± 1.07
Basal Forebrain2.87 ± 0.5
Basal Part of Pons2.38 ± 0.8
Cerebellar Cortex2.36 ± 0.72
Cerebellar Nuclei2.96 ± 0.76
Claustrum3.51 ± 0.97
Epithalamus2.35 ± 0.66
Frontal Lobe2.42 ± 0.74
Globus Pallidus3.6 ± 0.72
Hypothalamus2.57 ± 0.73
Insula3 ± 1.27
Limbic Lobe2.6 ± 0.85
Mesencephalon2.79 ± 0.91
Myelencephalon2.62 ± 0.79
Occipital Lobe2.49 ± 0.62
Parietal Lobe2.61 ± 1.02
Pontine Tegmentum2.74 ± 0.97
Striatum2.82 ± 0.88
Subthalamus2.49 ± 0.9
Temporal Lobe2.57 ± 0.88
Thalamus2.54 ± 0.73
White Matter3.77 ± 0.52
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Stag3CBCerebellum0.2
0.29
Stag3CTXCerebral cortex0.25
0.34
Stag3HIPHippocampal region0.23
0.26
Stag3HPFHippocampal formation0.16
0.17
Stag3HYHypothalamus0.23
0.22
Stag3LSXLateral septal complex0.14
0.12
Stag3MBMidbrain0.12
0.22
Stag3MYMedulla0.15
0.26
Stag3OLFOlfactory bulb0.39
0.36
Stag3PPons0.13
0.17
Stag3PALPallidum0.12
0.12
Stag3RHPRetrohippocampal region0.07
0.05
Stag3sAMYStriatum-like amygdalar nuclei0.18
0.32
Stag3STRStriatum0.2
0.21
Stag3STRdStriatum dorsal region0.19
0.21
Stag3STRvStriatum ventral region0.25
0.22
Stag3THThalamus0.27
0.59
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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