AutismKB 2.0

Annotation Detail for STAG2


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Basic Information Top
Gene Symbol:STAG2 ( DKFZp686P168,DKFZp781H1753,FLJ25871,SA-2,SA2,bA517O1.1 )
Gene Full Name: stromal antigen 2
Band: Xq25
Quick LinksEntrez ID:10735; OMIM: 604359; Uniprot ID:STAG2_HUMAN; ENSEMBL ID: ENSG00000101972; HGNC ID: 11355
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body8 / 70761113
blastocyst3 / 6231948
fetus42 / 56401274
neonate0 / 310970 
infant0 / 236200 
juvenile13 / 55556233
adult114 / 193912158
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor4 / 9417842
cervical tumor1 / 3436629
chondrosarcoma3 / 8282336
colorectal tumor14 / 114246122
esophageal tumor3 / 17290173
gastrointestinal tumor5 / 11936941
germ cell tumor34 / 263845128
glioma4 / 10688337
head and neck tumor10 / 13630273
kidney tumor6 / 6895987
leukemia5 / 9584252
liver tumor3 / 9635931
lung tumor3 / 10312729
lymphoma3 / 7175541
non-neoplasia4 / 9725041
normal192 / 336030757
ovarian tumor4 / 7668252
pancreatic tumor5 / 10461647
primitive neuroectodermal tumor of the CNS10 / 12568079
prostate cancer7 / 10268068
retinoblastoma7 / 46356151
skin tumor14 / 124949112
soft tissue/muscle tissue tumor8 / 12519163
uterine tumor11 / 90257121
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites1 / 4001524
bladder7 / 29757235
blood3 / 12347824
bone0 / 716550 
bone marrow3 / 4880161
brain52 / 110098947
cervix4 / 4817183
connective tissue9 / 14925560
ear8 / 16212493
embryonic tissue17 / 21572278
esophagus3 / 20209148
eye15 / 21105471
heart2 / 8962622
intestine18 / 23447276
kidney19 / 21177789
larynx2 / 2414582
liver11 / 20774352
lung19 / 33697456
lymph0 / 442700 
lymph node21 / 91610229
mammary gland7 / 15327145
mouth7 / 67052104
muscle12 / 107715111
nerve2 / 15768126
ovary5 / 10205148
pancreas12 / 21481255
parathyroid3 / 20539146
pharynx2 / 4132848
pituitary gland1 / 1658560
placenta23 / 28082581
prostate11 / 18934558
salivary gland4 / 20155198
skin14 / 21057466
spleen1 / 5395218
stomach3 / 9661931
testis14 / 33044242
thymus11 / 81131135
thyroid3 / 4747363
tonsil3 / 16999176
trachea6 / 52413114
umbilical cord0 / 136800 
uterus20 / 23287885
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 207983_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts133.7
Adipocyte20.1
AdrenalCortex22.2
Adrenalgland15.55
Amygdala16.9
Appendix20.4
AtrioventricularNode16.75
BDCA4+_DentriticCells268.25
Bonemarrow20.15
BronchialEpithelialCells23.75
CD105+_Endothelial54.75
CD14+_Monocytes103.8
CD19+_BCells(neg._sel.)221.3
CD33+_Myeloid268.15
CD34+255.7
CD4+_Tcells177.1
CD56+_NKCells276.3
CD71+_EarlyErythroid190.3
CD8+_Tcells171.25
CardiacMyocytes28.25
Caudatenucleus23
Cerebellum13.25
CerebellumPeduncles22.55
CiliaryGanglion14.85
CingulateCortex18.4
Colorectaladenocarcinoma21.3
DorsalRootGanglion16.85
FetalThyroid21.4
Fetalbrain20.65
Fetalliver47.7
Fetallung19.05
GlobusPallidus15.35
Heart21.5
Hypothalamus22.95
Kidney8.1
Leukemia_chronicMyelogenousK-56236.9
Leukemia_promyelocytic-HL-6027.6
Leukemialymphoblastic(MOLT-4)65.9
Liver13.9
Lung7.1
Lymphnode18.5
Lymphoma_burkitts(Daudi)54.8
Lymphoma_burkitts(Raji)21
MedullaOblongata23.8
OccipitalLobe19.3
OlfactoryBulb42.7
Ovary36.7
Pancreas17.1
PancreaticIslet26.3
ParietalLobe23.6
Pituitary41.25
Placenta7.35
Pons21.15
PrefrontalCortex33.75
Prostate16.55
Salivarygland15
SkeletalMuscle25.6
Skin17.8
SmoothMuscle24.45
Spinalcord16.15
SubthalamicNucleus19.95
SuperiorCervicalGanglion24.4
TemporalLobe21.55
Testis10.1
TestisGermCell14.25
TestisIntersitial13.4
TestisLeydigCell21.9
TestisSeminiferousTubule15.1
Thalamus19.85
Thymus7.95
Thyroid26.65
Tongue23.05
Tonsil42.55
Trachea19.45
TrigeminalGanglion16.3
Uterus20.4
UterusCorpus18.95
WholeBlood40.95
Wholebrain8.6
colon24.25
pineal_day40.64
pineal_night43.68
retina22.125
small_intestine13.65
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P33856
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.84 ± 0.33
Basal Forebrain7.06 ± 0.21
Basal Part of Pons6.61 ± 0.36
Cerebellar Cortex7.02 ± 0.18
Cerebellar Nuclei7.03 ± 0.4
Claustrum7.17 ± 0.35
Epithalamus7.41 ± 0.37
Frontal Lobe6.7 ± 0.41
Globus Pallidus7.5 ± 0.25
Hypothalamus6.84 ± 0.37
Insula6.69 ± 0.18
Limbic Lobe6.64 ± 0.44
Mesencephalon6.89 ± 0.33
Myelencephalon6.87 ± 0.4
Occipital Lobe6.98 ± 0.36
Parietal Lobe6.83 ± 0.36
Pontine Tegmentum6.92 ± 0.37
Striatum7 ± 0.45
Subthalamus6.86 ± 0.16
Temporal Lobe6.72 ± 0.3
Thalamus6.9 ± 0.28
White Matter8.32 ± 0.28
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Stag2CBCerebellum0.98
1.42
Stag2CTXCerebral cortex1.7
2.21
Stag2HIPHippocampal region0.78
1.13
Stag2HPFHippocampal formation0.56
0.73
Stag2HYHypothalamus0.25
0.34
Stag2LSXLateral septal complex0.54
0.73
Stag2MBMidbrain0.5
0.63
Stag2MYMedulla0.37
0.51
Stag2OLFOlfactory bulb1.05
0.77
Stag2PPons0.33
0.54
Stag2PALPallidum0.25
0.34
Stag2RHPRetrohippocampal region0.11
0.08
Stag2sAMYStriatum-like amygdalar nuclei0.52
0.49
Stag2STRStriatum0.8
1.01
Stag2STRdStriatum dorsal region1.01
1.4
Stag2STRvStriatum ventral region0.37
0.33
Stag2THThalamus0.51
0.57
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00003552 12 623 634 HTDTDVLEACSK Peptide Atlas
STAG2_HUMAN_462 11 462 472 QAAECHPPVGR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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