Annotation Detail for RAI1
Basic Information Top
| Gene Symbol: | RAI1 ( DKFZp434A139,KIAA1820,MGC12824,SMCR,SMS ) |
|---|---|
| Gene Full Name: | retinoic acid induced 1 |
| Band: | 17p11.2 |
| Quick Links | Entrez ID:10743; OMIM: 607642; Uniprot ID:RAI1_HUMAN; ENSEMBL ID: ENSG00000108557; HGNC ID: 9834 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.655395
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 8 / 70761 | 113 |  |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 14 / 564012 | 24 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 57 / 1939121 | 29 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 14 / 114246 | 122 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 6 / 119369 | 50 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 5 / 136302 | 36 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 1 / 95842 | 10 |  |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 64 / 3360307 | 19 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 4 / 125680 | 31 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 6 / 90257 | 66 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 9 / 1100989 | 8 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 10 / 215722 | 46 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 13 / 211054 | 61 | |
| heart | 2 / 89626 | 22 | |
| intestine | 18 / 234472 | 76 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 2 / 24145 | 82 | |
| liver | 2 / 207743 | 9 | |
| lung | 6 / 336974 | 17 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 13 / 214812 | 60 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 3 / 210574 | 14 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 6 / 96619 | 62 | |
| testis | 0 / 330442 | 0 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 8 / 232878 | 34 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P77807
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.91 ± 0.58 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.47 ± 0.14 | |
| Basal Part of Pons | 7.27 ± 0.42 | |
| Cerebellar Cortex | 6.92 ± 0.36 | |
| Cerebellar Nuclei | 6.99 ± 0.39 | |
| Claustrum | 7.94 ± 0.63 | |
| Epithalamus | 6.62 ± 0.36 | |
| Frontal Lobe | 7.04 ± 0.44 | |
| Globus Pallidus | 7.06 ± 0.21 | |
| Hypothalamus | 7.03 ± 0.47 | |
| Insula | 7.1 ± 0.41 | |
| Limbic Lobe | 7.53 ± 0.5 | |
| Mesencephalon | 7.36 ± 0.5 | |
| Myelencephalon | 7.34 ± 0.51 | |
| Occipital Lobe | 7.75 ± 0.56 | |
| Parietal Lobe | 7.4 ± 0.42 | |
| Pontine Tegmentum | 7.06 ± 0.42 | |
| Striatum | 7.62 ± 0.46 | |
| Subthalamus | 7 ± 0.4 | |
| Temporal Lobe | 7.25 ± 0.42 | |
| Thalamus | 7.11 ± 0.38 | |
| White Matter | 7.01 ± 0.46 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Rai1 | CB | Cerebellum | 17.96 | |
| 19.15 | | |||
| Rai1 | CTX | Cerebral cortex | 52.6 | |
| 37.42 | | |||
| Rai1 | HIP | Hippocampal region | 36.39 | |
| 41.8 | | |||
| Rai1 | HPF | Hippocampal formation | 36.24 | |
| 35.59 | | |||
| Rai1 | HY | Hypothalamus | 8.69 | |
| 6.28 | | |||
| Rai1 | LSX | Lateral septal complex | 20.37 | |
| 13.1 | | |||
| Rai1 | MB | Midbrain | 14.24 | |
| 12.3 | | |||
| Rai1 | MY | Medulla | 18.23 | |
| 17.05 | | |||
| Rai1 | OLF | Olfactory bulb | 42.2 | |
| 31.58 | | |||
| Rai1 | P | Pons | 13.6 | |
| 12.89 | | |||
| Rai1 | PAL | Pallidum | 13.06 | |
| 10.28 | | |||
| Rai1 | RHP | Retrohippocampal region | 36.16 | |
| 26.01 | | |||
| Rai1 | sAMY | Striatum-like amygdalar nuclei | 19.14 | |
| 12.8 | | |||
| Rai1 | STR | Striatum | 31.21 | |
| 20.2 | | |||
| Rai1 | STRd | Striatum dorsal region | 34.06 | |
| 22.07 | | |||
| Rai1 | STRv | Striatum ventral region | 36.35 | |
| 22.81 | | |||
| Rai1 | TH | Thalamus | 17.92 | |
| 14.01 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00007005 | 25 | 238 | 262 | SCTAPTAQPHDRPLTASSSLAPGQR | Peptide Atlas |