AutismKB 2.0

Annotation Detail for SEC24A


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Basic Information Top
Gene Symbol:SEC24A ( - )
Gene Full Name: SEC24 family, member A (S. cerevisiae)
Band: 5q31.1
Quick LinksEntrez ID:10802; OMIM: 607183; Uniprot ID:SC24A_HUMAN; ENSEMBL ID: ENSG00000113615; HGNC ID: 10703
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body6 / 7076184
blastocyst3 / 6231948
fetus17 / 56401230
neonate0 / 310970 
infant1 / 2362042
juvenile0 / 555560 
adult89 / 193912145
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor3 / 3436687
chondrosarcoma5 / 8282360
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor4 / 11936933
germ cell tumor6 / 26384522
glioma3 / 10688328
head and neck tumor5 / 13630236
kidney tumor0 / 689590 
leukemia1 / 9584210
liver tumor3 / 9635931
lung tumor2 / 10312719
lymphoma1 / 7175513
non-neoplasia3 / 9725030
normal123 / 336030736
ovarian tumor1 / 7668213
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer8 / 10268077
retinoblastoma1 / 4635621
skin tumor2 / 12494916
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder2 / 2975767
blood3 / 12347824
bone6 / 7165583
bone marrow4 / 4880181
brain23 / 110098920
cervix3 / 4817162
connective tissue4 / 14925526
ear4 / 16212246
embryonic tissue11 / 21572250
esophagus0 / 202090 
eye9 / 21105442
heart0 / 896260 
intestine5 / 23447221
kidney2 / 2117779
larynx0 / 241450 
liver17 / 20774381
lung7 / 33697420
lymph1 / 4427022
lymph node3 / 9161032
mammary gland9 / 15327158
mouth3 / 6705244
muscle4 / 10771537
nerve0 / 157680 
ovary2 / 10205119
pancreas7 / 21481232
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta22 / 28082578
prostate9 / 18934547
salivary gland0 / 201550 
skin3 / 21057414
spleen0 / 539520 
stomach4 / 9661941
testis10 / 33044230
thymus0 / 811310 
thyroid2 / 4747342
tonsil0 / 169990 
trachea3 / 5241357
umbilical cord0 / 136800 
uterus6 / 23287825
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212902_at
Cell line Expression level Expression bar
721_B_lymphoblasts60.95
Adipocyte8.3
AdrenalCortex11.75
Adrenalgland10.7
Amygdala8.3
Appendix10.75
AtrioventricularNode8.3
BDCA4+_DentriticCells76.7
Bonemarrow10.05
BronchialEpithelialCells12.85
CD105+_Endothelial10.8
CD14+_Monocytes18.45
CD19+_BCells(neg._sel.)9.1
CD33+_Myeloid13.1
CD34+18.7
CD4+_Tcells14
CD56+_NKCells19.15
CD71+_EarlyErythroid8.55
CD8+_Tcells11.8
CardiacMyocytes22.25
Caudatenucleus7.8
Cerebellum7.25
CerebellumPeduncles10.55
CiliaryGanglion8.25
CingulateCortex9.3
Colorectaladenocarcinoma11.7
DorsalRootGanglion8.45
FetalThyroid9.8
Fetalbrain8.85
Fetalliver8.05
Fetallung6.65
GlobusPallidus6.85
Heart12.25
Hypothalamus8.6
Kidney8.25
Leukemia_chronicMyelogenousK-5628.65
Leukemia_promyelocytic-HL-607.9
Leukemialymphoblastic(MOLT-4)7.35
Liver12.55
Lung9.1
Lymphnode9
Lymphoma_burkitts(Daudi)11.6
Lymphoma_burkitts(Raji)13.45
MedullaOblongata7.2
OccipitalLobe7.75
OlfactoryBulb6.5
Ovary6.6
Pancreas11.25
PancreaticIslet9.7
ParietalLobe10.4
Pituitary11.05
Placenta29.25
Pons8.65
PrefrontalCortex9.5
Prostate9.8
Salivarygland10.35
SkeletalMuscle17.7
Skin7.45
SmoothMuscle12.15
Spinalcord9.1
SubthalamicNucleus8.5
SuperiorCervicalGanglion19.1
TemporalLobe8.2
Testis7.55
TestisGermCell7
TestisIntersitial8.15
TestisLeydigCell9.25
TestisSeminiferousTubule7.4
Thalamus8.95
Thymus6.2
Thyroid9.45
Tongue9.65
Tonsil8.8
Trachea9.95
TrigeminalGanglion10.95
Uterus6.6
UterusCorpus11.1
WholeBlood9.4
Wholebrain6.6
colon10.05
pineal_day11.2
pineal_night11.7
retina10.075
small_intestine28.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P394605
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.45 ± 0.51
Basal Forebrain5.78 ± 0.18
Basal Part of Pons5.78 ± 0.25
Cerebellar Cortex6.2 ± 0.19
Cerebellar Nuclei5.75 ± 0.34
Claustrum5.42 ± 0.66
Epithalamus5.63 ± 0.46
Frontal Lobe5.94 ± 0.4
Globus Pallidus5.65 ± 0.29
Hypothalamus6.42 ± 0.37
Insula5.92 ± 0.34
Limbic Lobe5.64 ± 0.43
Mesencephalon5.84 ± 0.46
Myelencephalon5.85 ± 0.43
Occipital Lobe5.53 ± 0.36
Parietal Lobe5.86 ± 0.36
Pontine Tegmentum5.85 ± 0.49
Striatum5.39 ± 0.38
Subthalamus5.87 ± 0.42
Temporal Lobe5.94 ± 0.29
Thalamus5.92 ± 0.38
White Matter5.97 ± 0.33
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Sec24aCBCerebellum10.62
10.73
Sec24aCTXCerebral cortex13.15
8.84
Sec24aHIPHippocampal region10.3
9.38
Sec24aHPFHippocampal formation8.95
7.37
Sec24aHYHypothalamus4.52
3.13
Sec24aLSXLateral septal complex13.21
8.51
Sec24aMBMidbrain13.16
13.13
Sec24aMYMedulla17.82
19.18
Sec24aOLFOlfactory bulb12.94
8.53
Sec24aPPons20.49
22.1
Sec24aPALPallidum6.51
5.15
Sec24aRHPRetrohippocampal region7.02
4.83
Sec24asAMYStriatum-like amygdalar nuclei4.57
2.85
Sec24aSTRStriatum3.26
2.15
Sec24aSTRdStriatum dorsal region1.27
0.92
Sec24aSTRvStriatum ventral region5.6
3.5
Sec24aTHThalamus6.68
4.93
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00001417 15 388 402 CTLTSIPQTQALLNK Peptide Atlas
SC24A_HUMAN_882 11 882 892 LFPLFVLALLK PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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