AutismKB 2.0

Annotation Detail for SDCCAG3


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Basic Information Top
Gene Symbol:SDCCAG3 ( NY-CO-3 )
Gene Full Name: serologically defined colon cancer antigen 3
Band: 9q34.3
Quick LinksEntrez ID:10807; OMIM: NA; Uniprot ID:SDCG3_HUMAN; ENSEMBL ID: ENSG00000165689; HGNC ID: 10667
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst2 / 6231932
fetus58 / 564012102
neonate0 / 310970 
infant0 / 236200 
juvenile5 / 5555689
adult82 / 193912142
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor7 / 9417874
cervical tumor8 / 34366232
chondrosarcoma9 / 82823108
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor6 / 11936950
germ cell tumor19 / 26384572
glioma17 / 106883159
head and neck tumor4 / 13630229
kidney tumor4 / 6895958
leukemia7 / 9584273
liver tumor1 / 9635910
lung tumor6 / 10312758
lymphoma7 / 7175597
non-neoplasia0 / 972500 
normal168 / 336030749
ovarian tumor5 / 7668265
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS16 / 125680127
prostate cancer5 / 10268048
retinoblastoma1 / 4635621
skin tumor13 / 124949104
soft tissue/muscle tissue tumor5 / 12519139
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites3 / 4001574
bladder0 / 297570 
blood4 / 12347832
bone5 / 7165569
bone marrow1 / 4880120
brain32 / 110098929
cervix12 / 48171249
connective tissue7 / 14925546
ear0 / 162120 
embryonic tissue6 / 21572227
esophagus0 / 202090 
eye10 / 21105447
heart7 / 8962678
intestine11 / 23447246
kidney8 / 21177737
larynx0 / 241450 
liver4 / 20774319
lung21 / 33697462
lymph5 / 44270112
lymph node11 / 91610120
mammary gland8 / 15327152
mouth4 / 6705259
muscle2 / 10771518
nerve3 / 15768190
ovary9 / 10205188
pancreas7 / 21481232
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta15 / 28082553
prostate8 / 18934542
salivary gland0 / 201550 
skin28 / 210574132
spleen1 / 5395218
stomach2 / 9661920
testis18 / 33044254
thymus0 / 811310 
thyroid1 / 4747321
tonsil2 / 16999117
trachea1 / 5241319
umbilical cord0 / 136800 
uterus9 / 23287838
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218427_at
Cell line Expression level Expression bar
721_B_lymphoblasts40.75
Adipocyte17.1
AdrenalCortex22.4
Adrenalgland19
Amygdala21.9
Appendix22.45
AtrioventricularNode17.35
BDCA4+_DentriticCells29.5
Bonemarrow23.05
BronchialEpithelialCells36.1
CD105+_Endothelial57.45
CD14+_Monocytes25.5
CD19+_BCells(neg._sel.)48.5
CD33+_Myeloid31.5
CD34+47.25
CD4+_Tcells74.95
CD56+_NKCells49.7
CD71+_EarlyErythroid20.95
CD8+_Tcells75.85
CardiacMyocytes29.05
Caudatenucleus18.5
Cerebellum18.75
CerebellumPeduncles36.2
CiliaryGanglion19
CingulateCortex22.65
Colorectaladenocarcinoma167.75
DorsalRootGanglion26.35
FetalThyroid20.45
Fetalbrain19.75
Fetalliver21.2
Fetallung14.7
GlobusPallidus13.55
Heart28.15
Hypothalamus20.3
Kidney15.45
Leukemia_chronicMyelogenousK-56235.65
Leukemia_promyelocytic-HL-6077.2
Leukemialymphoblastic(MOLT-4)22.35
Liver46.3
Lung42.95
Lymphnode34.6
Lymphoma_burkitts(Daudi)25.6
Lymphoma_burkitts(Raji)392.1
MedullaOblongata20.1
OccipitalLobe22
OlfactoryBulb19.85
Ovary18.55
Pancreas17.1
PancreaticIslet22.75
ParietalLobe23.45
Pituitary20.3
Placenta23.25
Pons20.9
PrefrontalCortex28.15
Prostate37.35
Salivarygland26.3
SkeletalMuscle27.05
Skin17.35
SmoothMuscle24.85
Spinalcord16.95
SubthalamicNucleus16.25
SuperiorCervicalGanglion41.35
TemporalLobe15.45
Testis25.25
TestisGermCell21
TestisIntersitial16.3
TestisLeydigCell21.1
TestisSeminiferousTubule22.95
Thalamus22.6
Thymus27.2
Thyroid66.1
Tongue17
Tonsil21.65
Trachea18.45
TrigeminalGanglion26.2
Uterus21.25
UterusCorpus19.05
WholeBlood20.4
Wholebrain19.7
colon39.05
pineal_day29.94
pineal_night27.38
retina51
small_intestine62.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_5099_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.05 ± 0.4
Basal Forebrain4.91 ± 0.25
Basal Part of Pons5.13 ± 0.41
Cerebellar Cortex4.85 ± 0.42
Cerebellar Nuclei4.92 ± 0.36
Claustrum5.12 ± 0.61
Epithalamus4.74 ± 0.17
Frontal Lobe4.73 ± 0.44
Globus Pallidus5.29 ± 0.34
Hypothalamus4.61 ± 0.32
Insula4.76 ± 0.31
Limbic Lobe4.96 ± 0.42
Mesencephalon4.9 ± 0.43
Myelencephalon4.86 ± 0.42
Occipital Lobe5.13 ± 0.4
Parietal Lobe4.91 ± 0.48
Pontine Tegmentum4.82 ± 0.48
Striatum4.88 ± 0.42
Subthalamus4.81 ± 0.35
Temporal Lobe4.85 ± 0.38
Thalamus4.86 ± 0.33
White Matter5.33 ± 0.31
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Sdccag3CBCerebellum9.9
6.81
Sdccag3CTXCerebral cortex21.72
13.5
Sdccag3HIPHippocampal region37.42
18.73
Sdccag3HPFHippocampal formation31.14
18.17
Sdccag3HYHypothalamus4.67
3.64
Sdccag3LSXLateral septal complex8.81
4.76
Sdccag3MBMidbrain4.05
3.13
Sdccag3MYMedulla4.64
3.65
Sdccag3OLFOlfactory bulb42.26
27.38
Sdccag3PPons10.52
8.08
Sdccag3PALPallidum2.34
1.43
Sdccag3RHPRetrohippocampal region23.39
16.91
Sdccag3sAMYStriatum-like amygdalar nuclei13.9
9.18
Sdccag3STRStriatum6.43
3.85
Sdccag3STRdStriatum dorsal region4.85
2.94
Sdccag3STRvStriatum ventral region5.52
2.75
Sdccag3THThalamus9.22
5.28
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00505205 24 216 239 VSPASPAGSPSADFAVHGESLGDR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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