Annotation Detail for TUBGCP2
Basic Information Top
| Gene Symbol: | TUBGCP2 ( GCP2,MGC138162,SPBC97,Spc97p ) |
|---|---|
| Gene Full Name: | tubulin, gamma complex associated protein 2 |
| Band: | 10q26.3 |
| Quick Links | Entrez ID:10844; OMIM: NA; Uniprot ID:GCP2_HUMAN; ENSEMBL ID: ENSG00000130640; HGNC ID: 18599 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.523370
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 3 / 62319 | 48 |  |
| fetus | 70 / 564012 | 124 | |
| neonate | 1 / 31097 | 32 | |
| infant | 6 / 23620 | 254 |  |
| juvenile | 1 / 55556 | 17 | |
| adult | 145 / 1939121 | 74 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 8 / 94178 | 84 | |
| cervical tumor | 4 / 34366 | 116 | |
| chondrosarcoma | 8 / 82823 | 96 | |
| colorectal tumor | 6 / 114246 | 52 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 37 / 263845 | 140 | |
| glioma | 18 / 106883 | 168 | |
| head and neck tumor | 13 / 136302 | 95 | |
| kidney tumor | 5 / 68959 | 72 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 5 / 96359 | 51 | |
| lung tumor | 13 / 103127 | 126 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 6 / 97250 | 61 | |
| normal | 306 / 3360307 | 91 | |
| ovarian tumor | 22 / 76682 | 286 | |
| pancreatic tumor | 18 / 104616 | 172 | |
| primitive neuroectodermal tumor of the CNS | 6 / 125680 | 47 | |
| prostate cancer | 5 / 102680 | 48 | |
| retinoblastoma | 4 / 46356 | 86 | |
| skin tumor | 11 / 124949 | 88 | |
| soft tissue/muscle tissue tumor | 8 / 125191 | 63 | |
| uterine tumor | 7 / 90257 | 77 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 6 / 123478 | 48 | |
| bone | 6 / 71655 | 83 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 120 / 1100989 | 108 | |
| cervix | 5 / 48171 | 103 | |
| connective tissue | 9 / 149255 | 60 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 11 / 215722 | 50 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 34 / 211054 | 161 | |
| heart | 1 / 89626 | 11 | |
| intestine | 23 / 234472 | 98 | |
| kidney | 33 / 211777 | 155 | |
| larynx | 0 / 24145 | 0 | |
| liver | 10 / 207743 | 48 | |
| lung | 36 / 336974 | 106 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 8 / 91610 | 87 | |
| mammary gland | 16 / 153271 | 104 | |
| mouth | 11 / 67052 | 164 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 25 / 102051 | 244 | |
| pancreas | 36 / 214812 | 167 | |
| parathyroid | 8 / 20539 | 389 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 9 / 280825 | 32 | |
| prostate | 12 / 189345 | 63 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 23 / 210574 | 109 | |
| spleen | 7 / 53952 | 129 | |
| stomach | 3 / 96619 | 31 | |
| testis | 29 / 330442 | 87 | |
| thymus | 18 / 81131 | 221 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 4 / 52413 | 76 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 19 / 232878 | 81 | |
| vascular | 1 / 51780 | 19 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 202476_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 7.6 |  |
| Adipocyte | 5.9 | |
| AdrenalCortex | 6.1 | |
| Adrenalgland | 5 | |
| Amygdala | 6.35 | |
| Appendix | 5.95 | |
| AtrioventricularNode | 4.35 | |
| BDCA4+_DentriticCells | 9.25 | |
| Bonemarrow | 7.15 | |
| BronchialEpithelialCells | 5.9 | |
| CD105+_Endothelial | 6 | |
| CD14+_Monocytes | 6.2 | |
| CD19+_BCells(neg._sel.) | 7.05 | |
| CD33+_Myeloid | 7.85 | |
| CD34+ | 7.75 | |
| CD4+_Tcells | 6.55 | |
| CD56+_NKCells | 10.4 | |
| CD71+_EarlyErythroid | 5.5 | |
| CD8+_Tcells | 5.85 | |
| CardiacMyocytes | 7.5 | |
| Caudatenucleus | 5.35 | |
| Cerebellum | 4.85 | |
| CerebellumPeduncles | 6.7 | |
| CiliaryGanglion | 4.05 | |
| CingulateCortex | 5.95 | |
| Colorectaladenocarcinoma | 6.2 | |
| DorsalRootGanglion | 4.4 | |
| FetalThyroid | 5.55 | |
| Fetalbrain | 5.95 | |
| Fetalliver | 5.2 | |
| Fetallung | 4.75 | |
| GlobusPallidus | 4.35 | |
| Heart | 10.5 | |
| Hypothalamus | 6.4 | |
| Kidney | 6.5 | |
| Leukemia_chronicMyelogenousK-562 | 5.35 | |
| Leukemia_promyelocytic-HL-60 | 5.25 | |
| Leukemialymphoblastic(MOLT-4) | 4.85 | |
| Liver | 7.95 | |
| Lung | 6.65 | |
| Lymphnode | 5.1 | |
| Lymphoma_burkitts(Daudi) | 7.55 | |
| Lymphoma_burkitts(Raji) | 8.25 | |
| MedullaOblongata | 5.5 | |
| OccipitalLobe | 5.3 | |
| OlfactoryBulb | 4.65 | |
| Ovary | 4 | |
| Pancreas | 4.75 | |
| PancreaticIslet | 6.35 | |
| ParietalLobe | 6.25 | |
| Pituitary | 8.1 | |
| Placenta | 6.2 | |
| Pons | 5.65 | |
| PrefrontalCortex | 7.65 | |
| Prostate | 7.05 | |
| Salivarygland | 4.7 | |
| SkeletalMuscle | 6.85 | |
| Skin | 4.5 | |
| SmoothMuscle | 6.75 | |
| Spinalcord | 6.25 | |
| SubthalamicNucleus | 5.3 | |
| SuperiorCervicalGanglion | 6.8 | |
| TemporalLobe | 5.4 | |
| Testis | 5.25 | |
| TestisGermCell | 4.7 | |
| TestisIntersitial | 4.95 | |
| TestisLeydigCell | 5.75 | |
| TestisSeminiferousTubule | 5.15 | |
| Thalamus | 6 | |
| Thymus | 5.9 | |
| Thyroid | 7.6 | |
| Tongue | 5.75 | |
| Tonsil | 5.8 | |
| Trachea | 6.4 | |
| TrigeminalGanglion | 6.05 | |
| Uterus | 4.9 | |
| UterusCorpus | 5.3 | |
| WholeBlood | 6.55 | |
| Wholebrain | 5.15 | |
| colon | 6 | |
| pineal_day | 7.22 | |
| pineal_night | 7.04 | |
| retina | 7.1 | |
| small_intestine | 5.75 | |
- Probe name: CUST_1090_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.3 ± 0.67 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.16 ± 0.7 | |
| Basal Part of Pons | 4.26 ± 0.38 | |
| Cerebellar Cortex | 4.31 ± 0.51 | |
| Cerebellar Nuclei | 3.84 ± 0.6 | |
| Claustrum | 4.07 ± 0.51 | |
| Epithalamus | 4.07 ± 0.52 | |
| Frontal Lobe | 4.08 ± 0.59 | |
| Globus Pallidus | 3.73 ± 0.84 | |
| Hypothalamus | 3.55 ± 0.36 | |
| Insula | 3.97 ± 0.39 | |
| Limbic Lobe | 4.01 ± 0.49 | |
| Mesencephalon | 3.98 ± 0.64 | |
| Myelencephalon | 4.06 ± 0.53 | |
| Occipital Lobe | 4.02 ± 0.42 | |
| Parietal Lobe | 4.01 ± 0.52 | |
| Pontine Tegmentum | 4 ± 0.54 | |
| Striatum | 3.7 ± 0.48 | |
| Subthalamus | 3.63 ± 0.73 | |
| Temporal Lobe | 4.19 ± 0.55 | |
| Thalamus | 4.08 ± 0.53 | |
| White Matter | 4.6 ± 0.29 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Tubgcp2 | CB | Cerebellum | 27.16 | |
| 49.78 | | |||
| Tubgcp2 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Tubgcp2 | HIP | Hippocampal region | 100 | |
| 100 | | |||
| Tubgcp2 | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| Tubgcp2 | HY | Hypothalamus | 37.98 | |
| 40.87 | | |||
| Tubgcp2 | LSX | Lateral septal complex | 84.17 | |
| 72.54 | | |||
| Tubgcp2 | MB | Midbrain | 38.49 | |
| 47.27 | | |||
| Tubgcp2 | MY | Medulla | 26.85 | |
| 42.2 | | |||
| Tubgcp2 | OLF | Olfactory bulb | 96.21 | |
| 100 | | |||
| Tubgcp2 | P | Pons | 21.93 | |
| 30.91 | | |||
| Tubgcp2 | PAL | Pallidum | 31.58 | |
| 33.37 | | |||
| Tubgcp2 | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Tubgcp2 | sAMY | Striatum-like amygdalar nuclei | 35.12 | |
| 32.06 | | |||
| Tubgcp2 | STR | Striatum | 26.81 | |
| 22.31 | | |||
| Tubgcp2 | STRd | Striatum dorsal region | 21.95 | |
| 18.15 | | |||
| Tubgcp2 | STRv | Striatum ventral region | 33.74 | |
| 25.94 | | |||
| Tubgcp2 | TH | Thalamus | 45.48 | |
| 45.82 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00027617 | 21 | 715 | 735 | SASNIDDVLGHHTGFLDTCLK | Peptide Atlas |