AutismKB 2.0

Annotation Detail for ARID5A


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Basic Information Top
Gene Symbol:ARID5A ( MRF-1,MRF1,RP11-363D14 )
Gene Full Name: AT rich interactive domain 5A (MRF1-like)
Band: 2q11.2
Quick LinksEntrez ID:10865; OMIM: 611583; Uniprot ID:ARI5A_HUMAN; ENSEMBL ID: ENSG00000196843; HGNC ID: 17361
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus7 / 56401212
neonate0 / 310970 
infant0 / 236200 
juvenile3 / 5555653
adult115 / 193912159
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma4 / 8282348
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor5 / 26384518
glioma3 / 10688328
head and neck tumor1 / 1363027
kidney tumor0 / 689590 
leukemia2 / 9584220
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal144 / 336030742
ovarian tumor1 / 7668213
pancreatic tumor9 / 10461686
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor12 / 12494996
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood11 / 12347889
bone1 / 7165513
bone marrow1 / 4880120
brain20 / 110098918
cervix0 / 481710 
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye8 / 21105437
heart0 / 896260 
intestine7 / 23447229
kidney2 / 2117779
larynx0 / 241450 
liver0 / 2077430 
lung12 / 33697435
lymph0 / 442700 
lymph node4 / 9161043
mammary gland2 / 15327113
mouth0 / 670520 
muscle0 / 1077150 
nerve2 / 15768126
ovary5 / 10205148
pancreas18 / 21481283
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta5 / 28082517
prostate6 / 18934531
salivary gland0 / 201550 
skin17 / 21057480
spleen1 / 5395218
stomach3 / 9661931
testis8 / 33044224
thymus3 / 8113136
thyroid0 / 474730 
tonsil2 / 16999117
trachea0 / 524130 
umbilical cord0 / 136800 
uterus6 / 23287825
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 213138_at
Cell line Expression level Expression bar
721_B_lymphoblasts64.8
Adipocyte13.65
AdrenalCortex18.75
Adrenalgland10.85
Amygdala9.2
Appendix7.25
AtrioventricularNode13.95
BDCA4+_DentriticCells35.85
Bonemarrow10.3
BronchialEpithelialCells6.75
CD105+_Endothelial10.55
CD14+_Monocytes48.45
CD19+_BCells(neg._sel.)42.9
CD33+_Myeloid20.2
CD34+16.5
CD4+_Tcells67.55
CD56+_NKCells84.25
CD71+_EarlyErythroid17.05
CD8+_Tcells50.4
CardiacMyocytes8.85
Caudatenucleus10.85
Cerebellum9.15
CerebellumPeduncles20.1
CiliaryGanglion15.9
CingulateCortex15.55
Colorectaladenocarcinoma7.35
DorsalRootGanglion21.3
FetalThyroid14.2
Fetalbrain12.5
Fetalliver8.15
Fetallung15.05
GlobusPallidus22.85
Heart11.7
Hypothalamus10.65
Kidney9.95
Leukemia_chronicMyelogenousK-56219.35
Leukemia_promyelocytic-HL-6014.05
Leukemialymphoblastic(MOLT-4)21.65
Liver16.25
Lung27.5
Lymphnode39.3
Lymphoma_burkitts(Daudi)18.05
Lymphoma_burkitts(Raji)16.75
MedullaOblongata8.55
OccipitalLobe12.1
OlfactoryBulb13.7
Ovary20.75
Pancreas11.3
PancreaticIslet20.65
ParietalLobe12.95
Pituitary19.9
Placenta13.15
Pons9.65
PrefrontalCortex13.45
Prostate20.45
Salivarygland7.75
SkeletalMuscle15.55
Skin18
SmoothMuscle15.4
Spinalcord15.55
SubthalamicNucleus21.8
SuperiorCervicalGanglion13.3
TemporalLobe8.85
Testis9.95
TestisGermCell9.75
TestisIntersitial7.25
TestisLeydigCell13.8
TestisSeminiferousTubule10.15
Thalamus15.35
Thymus23.05
Thyroid15.9
Tongue17.2
Tonsil27
Trachea15.1
TrigeminalGanglion8.5
Uterus13.1
UterusCorpus11.55
WholeBlood42.05
Wholebrain8.95
colon9.95
pineal_day12.14
pineal_night11.46
retina20.875
small_intestine10.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_10229_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.5 ± 0.57
Basal Forebrain5.21 ± 0.09
Basal Part of Pons5.33 ± 0.4
Cerebellar Cortex4.88 ± 0.31
Cerebellar Nuclei5.56 ± 0.4
Claustrum6.08 ± 0.67
Epithalamus4.62 ± 0.27
Frontal Lobe5.12 ± 0.45
Globus Pallidus5.93 ± 0.3
Hypothalamus4.75 ± 0.51
Insula5.08 ± 0.31
Limbic Lobe5.36 ± 0.48
Mesencephalon5.38 ± 0.45
Myelencephalon5.33 ± 0.51
Occipital Lobe5.41 ± 0.58
Parietal Lobe5.38 ± 0.48
Pontine Tegmentum5.21 ± 0.45
Striatum5.59 ± 0.5
Subthalamus5.08 ± 0.27
Temporal Lobe5.21 ± 0.42
Thalamus5.36 ± 0.35
White Matter5.62 ± 0.26
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Arid5aCBCerebellum8.97
10.43
Arid5aCTXCerebral cortex21.86
15.88
Arid5aHIPHippocampal region9.89
9.46
Arid5aHPFHippocampal formation12.92
11.48
Arid5aHYHypothalamus5.22
3.92
Arid5aLSXLateral septal complex14.03
10.66
Arid5aMBMidbrain5.78
5.11
Arid5aMYMedulla12.84
12.23
Arid5aOLFOlfactory bulb27.5
21.59
Arid5aPPons7.7
7.48
Arid5aPALPallidum6.94
5.64
Arid5aRHPRetrohippocampal region18.93
15.04
Arid5asAMYStriatum-like amygdalar nuclei5.08
3.59
Arid5aSTRStriatum6.69
4.72
Arid5aSTRdStriatum dorsal region5.64
4.07
Arid5aSTRvStriatum ventral region7.99
4.99
Arid5aTHThalamus22.55
18.04
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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