AutismKB 2.0

Annotation Detail for TSPAN9


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Basic Information Top
Gene Symbol:TSPAN9 ( NET-5,NET5,PP1057 )
Gene Full Name: tetraspanin 9
Band: 12p13.33-p13.32
Quick LinksEntrez ID:10867; OMIM: 613137; Uniprot ID:TSN9_HUMAN; ENSEMBL ID: ENSG00000011105; HGNC ID: 21640
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst3 / 6231948
fetus26 / 56401246
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult109 / 193912156
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor1 / 3436629
chondrosarcoma5 / 8282360
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor5 / 11936941
germ cell tumor25 / 26384594
glioma3 / 10688328
head and neck tumor10 / 13630273
kidney tumor3 / 6895943
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia3 / 9725030
normal134 / 336030739
ovarian tumor2 / 7668226
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer4 / 10268038
retinoblastoma3 / 4635664
skin tumor12 / 12494996
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone2 / 7165527
bone marrow0 / 488010 
brain25 / 110098922
cervix2 / 4817141
connective tissue7 / 14925546
ear0 / 162120 
embryonic tissue4 / 21572218
esophagus0 / 202090 
eye23 / 211054108
heart6 / 8962666
intestine9 / 23447238
kidney17 / 21177780
larynx0 / 241450 
liver4 / 20774319
lung13 / 33697438
lymph0 / 442700 
lymph node1 / 9161010
mammary gland3 / 15327119
mouth6 / 6705289
muscle1 / 1077159
nerve0 / 157680 
ovary8 / 10205178
pancreas7 / 21481232
parathyroid2 / 2053997
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta11 / 28082539
prostate10 / 18934552
salivary gland3 / 20155148
skin14 / 21057466
spleen0 / 539520 
stomach5 / 9661951
testis13 / 33044239
thymus0 / 811310 
thyroid1 / 4747321
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus13 / 23287855
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205665_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.2
Adipocyte4.95
AdrenalCortex5.75
Adrenalgland4.45
Amygdala5.2
Appendix5.45
AtrioventricularNode4.65
BDCA4+_DentriticCells5.4
Bonemarrow5.2
BronchialEpithelialCells4.95
CD105+_Endothelial5.05
CD14+_Monocytes5.4
CD19+_BCells(neg._sel.)5.25
CD33+_Myeloid6.3
CD34+6.3
CD4+_Tcells5.4
CD56+_NKCells5.9
CD71+_EarlyErythroid4.85
CD8+_Tcells4.7
CardiacMyocytes8.3
Caudatenucleus4.6
Cerebellum4.15
CerebellumPeduncles5.95
CiliaryGanglion3.9
CingulateCortex5.3
Colorectaladenocarcinoma5.15
DorsalRootGanglion4.2
FetalThyroid5.1
Fetalbrain4.85
Fetalliver4.6
Fetallung4
GlobusPallidus3.85
Heart8.55
Hypothalamus5.4
Kidney4.35
Leukemia_chronicMyelogenousK-5624.6
Leukemia_promyelocytic-HL-604.5
Leukemialymphoblastic(MOLT-4)4.15
Liver8.25
Lung5.5
Lymphnode4.3
Lymphoma_burkitts(Daudi)6.6
Lymphoma_burkitts(Raji)7.85
MedullaOblongata4.55
OccipitalLobe4.55
OlfactoryBulb3.95
Ovary3.55
Pancreas4.2
PancreaticIslet5.5
ParietalLobe5.55
Pituitary5.9
Placenta5.2
Pons4.95
PrefrontalCortex6.1
Prostate6
Salivarygland4.2
SkeletalMuscle6.95
Skin4.2
SmoothMuscle5.65
Spinalcord5.4
SubthalamicNucleus4.75
SuperiorCervicalGanglion6.45
TemporalLobe4.7
Testis4.35
TestisGermCell4.3
TestisIntersitial4.3
TestisLeydigCell5.15
TestisSeminiferousTubule4.35
Thalamus5.3
Thymus3.9
Thyroid6.25
Tongue5.3
Tonsil5.05
Trachea4.25
TrigeminalGanglion6.8
Uterus4.05
UterusCorpus4.75
WholeBlood5.55
Wholebrain4.15
colon5.15
pineal_day6.28
pineal_night6.16
retina6.125
small_intestine4.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P151133
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.23 ± 1.11
Basal Forebrain3.09 ± 0.51
Basal Part of Pons2.46 ± 0.62
Cerebellar Cortex4.29 ± 0.62
Cerebellar Nuclei3.11 ± 0.73
Claustrum2.91 ± 0.89
Epithalamus3.28 ± 2.06
Frontal Lobe3.39 ± 0.87
Globus Pallidus2.22 ± 0.5
Hypothalamus3.05 ± 0.6
Insula3.31 ± 0.78
Limbic Lobe2.79 ± 0.86
Mesencephalon3.13 ± 0.89
Myelencephalon3.28 ± 0.82
Occipital Lobe3.37 ± 0.97
Parietal Lobe3.16 ± 1.06
Pontine Tegmentum3.38 ± 0.84
Striatum2.64 ± 0.83
Subthalamus2.87 ± 0.72
Temporal Lobe3.16 ± 0.92
Thalamus3.57 ± 0.9
White Matter1.54 ± 0.98
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Tspan9CBCerebellum59.46
100
Tspan9CTXCerebral cortex50.72
41.74
Tspan9HIPHippocampal region34.54
41.53
Tspan9HPFHippocampal formation48.05
53.21
Tspan9HYHypothalamus25.74
22.65
Tspan9LSXLateral septal complex23.49
18.24
Tspan9MBMidbrain36.5
40.24
Tspan9MYMedulla39.97
51.06
Tspan9OLFOlfactory bulb61.47
70.19
Tspan9PPons44.57
51.65
Tspan9PALPallidum35.85
35.49
Tspan9RHPRetrohippocampal region75.05
72.87
Tspan9sAMYStriatum-like amygdalar nuclei52.98
42.39
Tspan9STRStriatum40.66
31.59
Tspan9STRdStriatum dorsal region39.4
30.93
Tspan9STRvStriatum ventral region44.1
31.69
Tspan9THThalamus61.51
71.23
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp01428977 11 136 146 NAWNIIQAEMR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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