Annotation Detail for SUGT1
Basic Information Top
| Gene Symbol: | SUGT1 ( SGT1 ) |
|---|---|
| Gene Full Name: | SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) |
| Band: | 13q14.3 |
| Quick Links | Entrez ID:10910; OMIM: 604098; Uniprot ID:SUGT1_HUMAN; ENSEMBL ID: ENSG00000165416; HGNC ID: 16987 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.281902
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 17 / 564012 | 30 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 4 / 55556 | 71 |  |
| adult | 95 / 1939121 | 48 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 5 / 94178 | 53 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 6 / 82823 | 72 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 9 / 119369 | 75 | |
| germ cell tumor | 10 / 263845 | 37 | |
| glioma | 5 / 106883 | 46 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 108 / 3360307 | 32 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 24 / 104616 | 229 |  |
| primitive neuroectodermal tumor of the CNS | 4 / 125680 | 31 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 16 / 124949 | 128 | |
| soft tissue/muscle tissue tumor | 54 / 125191 | 431 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 0 / 29757 | 0 | |
| blood | 6 / 123478 | 48 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 29 / 1100989 | 26 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 46 / 149255 | 308 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 12 / 215722 | 55 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 1 / 89626 | 11 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 8 / 211777 | 37 | |
| larynx | 0 / 24145 | 0 | |
| liver | 8 / 207743 | 38 | |
| lung | 21 / 336974 | 62 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 |  |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 6 / 107715 | 55 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 30 / 214812 | 139 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 13 / 280825 | 46 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 2 / 20155 | 99 | |
| skin | 19 / 210574 | 90 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 10 / 96619 | 103 | |
| testis | 8 / 330442 | 24 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 5 / 16999 | 294 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 9 / 232878 | 38 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P162787
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 10.54 ± 0.11 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 10.48 ± 0.2 | |
| Basal Part of Pons | 10.54 ± 0.14 | |
| Cerebellar Cortex | 10.39 ± 0.12 | |
| Cerebellar Nuclei | 10.58 ± 0.15 | |
| Claustrum | 10.59 ± 0.14 | |
| Epithalamus | 10.34 ± 0.28 | |
| Frontal Lobe | 10.58 ± 0.22 | |
| Globus Pallidus | 10.99 ± 0.12 | |
| Hypothalamus | 10.59 ± 0.14 | |
| Insula | 10.66 ± 0.2 | |
| Limbic Lobe | 10.66 ± 0.24 | |
| Mesencephalon | 10.59 ± 0.24 | |
| Myelencephalon | 10.55 ± 0.26 | |
| Occipital Lobe | 10.44 ± 0.24 | |
| Parietal Lobe | 10.53 ± 0.2 | |
| Pontine Tegmentum | 10.62 ± 0.27 | |
| Striatum | 10.8 ± 0.19 | |
| Subthalamus | 10.78 ± 0.08 | |
| Temporal Lobe | 10.53 ± 0.18 | |
| Thalamus | 10.54 ± 0.18 | |
| White Matter | 11.46 ± 0.2 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Sugt1 | CB | Cerebellum | 56.83 | |
| 91.26 | | |||
| Sugt1 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Sugt1 | HIP | Hippocampal region | 99.3 | |
| 100 | | |||
| Sugt1 | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| Sugt1 | HY | Hypothalamus | 59.63 | |
| 54.08 | | |||
| Sugt1 | LSX | Lateral septal complex | 58.7 | |
| 42.63 | | |||
| Sugt1 | MB | Midbrain | 78.22 | |
| 80.08 | | |||
| Sugt1 | MY | Medulla | 83.71 | |
| 100 | | |||
| Sugt1 | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Sugt1 | P | Pons | 73.28 | |
| 90.08 | | |||
| Sugt1 | PAL | Pallidum | 67.05 | |
| 72.32 | | |||
| Sugt1 | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Sugt1 | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 100 | | |||
| Sugt1 | STR | Striatum | 92.35 | |
| 80.82 | | |||
| Sugt1 | STRd | Striatum dorsal region | 92.27 | |
| 79.39 | | |||
| Sugt1 | STRv | Striatum ventral region | 89.9 | |
| 77.41 | | |||
| Sugt1 | TH | Thalamus | 100 | |
| 100 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00000529 | 15 | 37 | 51 | ALEQKPDDAQYYCQR | Peptide Atlas |
| SUGT1_HUMAN_1 | 12 | 1 | 12 | AAAAAGTATSQR | PRIDE |
| SUGT1_HUMAN_2 | 12 | 2 | 13 | AAAAAGTATSQR | PRIDE |
| SUGT1_HUMAN_311 | 15 | 311 | 325 | LFQQIYSDGSDEVKR | PRIDE |
| SUGT1_HUMAN_36 | 15 | 36 | 50 | ALEQKPDDAQYYCQR | PRIDE |
| SUGT1_HUMAN_70 | 14 | 70 | 83 | SLELNPNNSTAMLR | PRIDE |