AutismKB 2.0

Annotation Detail for TCERG1


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Basic Information Top
Gene Symbol:TCERG1 ( CA150,MGC133200,TAF2S,Urn1 )
Gene Full Name: transcription elongation regulator 1
Band: 5q32
Quick LinksEntrez ID:10915; OMIM: 605409; Uniprot ID:TCRG1_HUMAN; ENSEMBL ID: ENSG00000113649; HGNC ID: 15630
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body9 / 70761127
blastocyst10 / 62319160
fetus60 / 564012106
neonate1 / 3109732
infant3 / 23620127
juvenile4 / 5555671
adult134 / 193912169
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma2 / 17475114
breast (mammary gland) tumor4 / 9417842
cervical tumor2 / 3436658
chondrosarcoma8 / 8282396
colorectal tumor8 / 11424670
esophageal tumor0 / 172900 
gastrointestinal tumor9 / 11936975
germ cell tumor31 / 263845117
glioma1 / 1068839
head and neck tumor12 / 13630288
kidney tumor3 / 6895943
leukemia4 / 9584241
liver tumor7 / 9635972
lung tumor3 / 10312729
lymphoma1 / 7175513
non-neoplasia1 / 9725010
normal235 / 336030769
ovarian tumor2 / 7668226
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS9 / 12568071
prostate cancer7 / 10268068
retinoblastoma0 / 463560 
skin tumor7 / 12494956
soft tissue/muscle tissue tumor5 / 12519139
uterine tumor10 / 90257110
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites6 / 40015149
bladder3 / 29757100
blood4 / 12347832
bone7 / 7165597
bone marrow2 / 4880140
brain55 / 110098949
cervix2 / 4817141
connective tissue7 / 14925546
ear4 / 16212246
embryonic tissue34 / 215722157
esophagus0 / 202090 
eye7 / 21105433
heart5 / 8962655
intestine12 / 23447251
kidney15 / 21177770
larynx1 / 2414541
liver15 / 20774372
lung27 / 33697480
lymph1 / 4427022
lymph node16 / 91610174
mammary gland7 / 15327145
mouth6 / 6705289
muscle8 / 10771574
nerve0 / 157680 
ovary7 / 10205168
pancreas6 / 21481227
parathyroid3 / 20539146
pharynx1 / 4132824
pituitary gland1 / 1658560
placenta16 / 28082556
prostate9 / 18934547
salivary gland1 / 2015549
skin11 / 21057452
spleen1 / 5395218
stomach6 / 9661962
testis21 / 33044263
thymus2 / 8113124
thyroid4 / 4747384
tonsil0 / 169990 
trachea3 / 5241357
umbilical cord0 / 136800 
uterus29 / 232878124
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202396_at
Cell line Expression level Expression bar
721_B_lymphoblasts237.55
Adipocyte7.85
AdrenalCortex9.8
Adrenalgland6.7
Amygdala55.5
Appendix10.35
AtrioventricularNode6.45
BDCA4+_DentriticCells107.8
Bonemarrow7.95
BronchialEpithelialCells61.6
CD105+_Endothelial239.55
CD14+_Monocytes15.5
CD19+_BCells(neg._sel.)46.95
CD33+_Myeloid141.75
CD34+250.65
CD4+_Tcells70.65
CD56+_NKCells82.4
CD71+_EarlyErythroid27.65
CD8+_Tcells146.15
CardiacMyocytes12.55
Caudatenucleus13.5
Cerebellum8.8
CerebellumPeduncles9.15
CiliaryGanglion5.7
CingulateCortex15.35
Colorectaladenocarcinoma41
DorsalRootGanglion6.25
FetalThyroid10.75
Fetalbrain75.75
Fetalliver23.45
Fetallung44.15
GlobusPallidus8.2
Heart9.9
Hypothalamus34.25
Kidney6.55
Leukemia_chronicMyelogenousK-562150.75
Leukemia_promyelocytic-HL-60250.45
Leukemialymphoblastic(MOLT-4)191.4
Liver10.25
Lung7.4
Lymphnode41.4
Lymphoma_burkitts(Daudi)136.85
Lymphoma_burkitts(Raji)101.75
MedullaOblongata15.55
OccipitalLobe26.2
OlfactoryBulb10.25
Ovary6.8
Pancreas29.45
PancreaticIslet12.25
ParietalLobe10.35
Pituitary25.65
Placenta9.1
Pons8.45
PrefrontalCortex51.25
Prostate9.95
Salivarygland9.75
SkeletalMuscle9.65
Skin7.3
SmoothMuscle15.55
Spinalcord15.45
SubthalamicNucleus10.5
SuperiorCervicalGanglion11.85
TemporalLobe8.2
Testis8.9
TestisGermCell12.15
TestisIntersitial7.55
TestisLeydigCell8.9
TestisSeminiferousTubule8.75
Thalamus10.25
Thymus13.35
Thyroid17.05
Tongue10.2
Tonsil15.55
Trachea9.65
TrigeminalGanglion10.5
Uterus52.55
UterusCorpus7.3
WholeBlood11.7
Wholebrain14
colon79.95
pineal_day102.26
pineal_night123.58
retina12.45
small_intestine27.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_5617_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.76 ± 0.37
Basal Forebrain9.35 ± 0.13
Basal Part of Pons9.37 ± 0.34
Cerebellar Cortex9.31 ± 0.35
Cerebellar Nuclei9.19 ± 0.44
Claustrum9.79 ± 0.46
Epithalamus9.13 ± 0.29
Frontal Lobe9.22 ± 0.32
Globus Pallidus9.09 ± 0.16
Hypothalamus9.09 ± 0.3
Insula9.25 ± 0.31
Limbic Lobe9.65 ± 0.39
Mesencephalon9.28 ± 0.34
Myelencephalon9.37 ± 0.33
Occipital Lobe9.86 ± 0.45
Parietal Lobe9.49 ± 0.32
Pontine Tegmentum9.31 ± 0.33
Striatum9.72 ± 0.28
Subthalamus9.2 ± 0.13
Temporal Lobe9.32 ± 0.34
Thalamus9.32 ± 0.23
White Matter9.55 ± 0.41
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Tcerg1CBCerebellum40.32
49.6
Tcerg1CTXCerebral cortex54.04
52.7
Tcerg1HIPHippocampal region53.48
57.3
Tcerg1HPFHippocampal formation56.43
56.44
Tcerg1HYHypothalamus39.08
33.29
Tcerg1LSXLateral septal complex18.12
11.7
Tcerg1MBMidbrain43.05
43.15
Tcerg1MYMedulla40.77
39.65
Tcerg1OLFOlfactory bulb62.78
59.86
Tcerg1PPons32.92
34.28
Tcerg1PALPallidum34.86
38.68
Tcerg1RHPRetrohippocampal region57.52
54.95
Tcerg1sAMYStriatum-like amygdalar nuclei35.8
31.75
Tcerg1STRStriatum16.28
12.42
Tcerg1STRdStriatum dorsal region9.22
6.62
Tcerg1STRvStriatum ventral region29.49
20.83
Tcerg1THThalamus27.64
22.6
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00008992 11 1057 1067 YLVLDCVPEER Peptide Atlas
TCRG1_HUMAN_1083 12 1083 1094 PPPPPTASEPTR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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