AutismKB 2.0

Annotation Detail for HNRNPA0


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Basic Information Top
Gene Symbol:HNRNPA0 ( HNRPA0 )
Gene Full Name: heterogeneous nuclear ribonucleoprotein A0
Band: 5q31.2
Quick LinksEntrez ID:10949; OMIM: 609409; Uniprot ID:ROA0_HUMAN; ENSEMBL ID: ENSG00000177733; HGNC ID: 5030
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body20 / 70761282
blastocyst25 / 62319401
fetus36 / 56401263
neonate2 / 3109764
infant1 / 2362042
juvenile8 / 55556143
adult191 / 193912198
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma1 / 1747557
breast (mammary gland) tumor9 / 9417895
cervical tumor3 / 3436687
chondrosarcoma5 / 8282360
colorectal tumor6 / 11424652
esophageal tumor0 / 172900 
gastrointestinal tumor33 / 119369276
germ cell tumor41 / 263845155
glioma15 / 106883140
head and neck tumor3 / 13630222
kidney tumor11 / 68959159
leukemia12 / 95842125
liver tumor3 / 9635931
lung tumor24 / 103127232
lymphoma5 / 7175569
non-neoplasia5 / 9725051
normal347 / 3360307103
ovarian tumor12 / 76682156
pancreatic tumor15 / 104616143
primitive neuroectodermal tumor of the CNS32 / 125680254
prostate cancer4 / 10268038
retinoblastoma12 / 46356258
skin tumor13 / 124949104
soft tissue/muscle tissue tumor32 / 125191255
uterine tumor11 / 90257121
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland2 / 3319760
ascites1 / 4001524
bladder1 / 2975733
blood13 / 123478105
bone6 / 7165583
bone marrow1 / 4880120
brain69 / 110098962
cervix3 / 4817162
connective tissue8 / 14925553
ear3 / 16212185
embryonic tissue74 / 215722343
esophagus0 / 202090 
eye30 / 211054142
heart4 / 8962644
intestine16 / 23447268
kidney28 / 211777132
larynx0 / 241450 
liver6 / 20774328
lung59 / 336974175
lymph3 / 4427067
lymph node13 / 91610141
mammary gland12 / 15327178
mouth1 / 6705214
muscle14 / 107715129
nerve5 / 15768317
ovary15 / 102051146
pancreas24 / 214812111
parathyroid5 / 20539243
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta53 / 280825188
prostate19 / 189345100
salivary gland1 / 2015549
skin38 / 210574180
spleen0 / 539520 
stomach26 / 96619269
testis16 / 33044248
thymus2 / 8113124
thyroid1 / 4747321
tonsil3 / 16999176
trachea0 / 524130 
umbilical cord2 / 13680146
uterus37 / 232878158
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201055_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts144.85
Adipocyte15.4
AdrenalCortex22.2
Adrenalgland13.95
Amygdala8.25
Appendix12.8
AtrioventricularNode8.9
BDCA4+_DentriticCells156.4
Bonemarrow17.05
BronchialEpithelialCells21.9
CD105+_Endothelial94.3
CD14+_Monocytes71.95
CD19+_BCells(neg._sel.)185.75
CD33+_Myeloid84.05
CD34+163.65
CD4+_Tcells93
CD56+_NKCells162.3
CD71+_EarlyErythroid65.15
CD8+_Tcells67.7
CardiacMyocytes25.45
Caudatenucleus11.2
Cerebellum10.5
CerebellumPeduncles23.7
CiliaryGanglion10.9
CingulateCortex15.1
Colorectaladenocarcinoma31.15
DorsalRootGanglion10.5
FetalThyroid21.85
Fetalbrain15.75
Fetalliver17.7
Fetallung31.05
GlobusPallidus14
Heart14.1
Hypothalamus14
Kidney11.7
Leukemia_chronicMyelogenousK-56217.85
Leukemia_promyelocytic-HL-6019.45
Leukemialymphoblastic(MOLT-4)74.65
Liver15.4
Lung89.35
Lymphnode18.85
Lymphoma_burkitts(Daudi)19.45
Lymphoma_burkitts(Raji)17.1
MedullaOblongata14.1
OccipitalLobe14.65
OlfactoryBulb9.6
Ovary9.55
Pancreas10.9
PancreaticIslet19.4
ParietalLobe13.4
Pituitary26.55
Placenta81.3
Pons12.1
PrefrontalCortex11.95
Prostate73.25
Salivarygland10.55
SkeletalMuscle14.1
Skin9.65
SmoothMuscle29.9
Spinalcord15.6
SubthalamicNucleus12.6
SuperiorCervicalGanglion14.15
TemporalLobe13.1
Testis12.8
TestisGermCell11.05
TestisIntersitial10.6
TestisLeydigCell13.2
TestisSeminiferousTubule11
Thalamus14.2
Thymus35.75
Thyroid41.45
Tongue14.9
Tonsil18.3
Trachea16.1
TrigeminalGanglion12.55
Uterus30.2
UterusCorpus11.9
WholeBlood51.4
Wholebrain8.1
colon18.2
pineal_day18.72
pineal_night17.04
retina34.65
small_intestine17.6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P371670
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.57 ± 0.33
Basal Forebrain6.5 ± 0.21
Basal Part of Pons6.84 ± 0.25
Cerebellar Cortex6.9 ± 0.32
Cerebellar Nuclei6.28 ± 0.37
Claustrum6.42 ± 0.52
Epithalamus6.42 ± 0.41
Frontal Lobe6.57 ± 0.4
Globus Pallidus5.99 ± 0.09
Hypothalamus6.46 ± 0.49
Insula6.56 ± 0.46
Limbic Lobe6.54 ± 0.4
Mesencephalon6.35 ± 0.47
Myelencephalon6.53 ± 0.39
Occipital Lobe6.6 ± 0.31
Parietal Lobe6.56 ± 0.32
Pontine Tegmentum6.48 ± 0.38
Striatum6.22 ± 0.27
Subthalamus6.6 ± 0.3
Temporal Lobe6.62 ± 0.34
Thalamus6.43 ± 0.31
White Matter6.17 ± 0.16
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00000243 21 61 81 ADAAMAASPHAVDGNTVELKR Peptide Atlas
ROA0_HUMAN_172 17 172 188 AVPKEDIYSGGGGGGSR PRIDE
ROA0_HUMAN_177 13 177 189 EDIYSGGGGGGSR PRIDE
ROA0_HUMAN_74 8 74 81 GNTVELKR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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